RNA id: AMCG00005617


Basic Information

Item Value
RNA id AMCG00005617
length 1860
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00005617
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5310659 ~ 5312974 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTGCTTTACTTTTCAGTGTGGAAAGACGGTGCTGGCAAACTTTCTGTCAGATACCACCGAAACAGTAGGGGGGGAATACAGCCCAACGCAAGGGGTCAGGATCCTGGAGTTCGAGTGCCAGAGTCTGGGCGGCAGCGGGAAAAGTGTGGGCTGCGAAGTGGAGCTGTGGGACTGTGCCGGAGACGCAAAGTTTGAGTCTTGCTGGCCGGCTTTGATGAAGGACGCCAATGGGGTGATCATCATGTTTAACCCCGACATGCCCAGCCATTTAAAGGAACTGGAGATGTGGTATTCTTCATTTGGCTCCTCACAAGGCATGCAGGACAGCCAGTGCCTGTTGATCGAACACCACAAACCGGGCAGTGGAGCCGAGAATGGACGCCCAGCTTTAGCCTCTCAGTTGAGCAAGCTGACCCTGGTCCACTCGAACCTGGAGGAGGACCCGGAGGCGCTGCGCCAGGAGTTTCGGCAGTACCTGGGATCGGTGGCCAAGACTCTGTCCGAGAGCCGGGAGCGTGAGGAGATGTCCATTATTACTTAGTGCAGAGCCCCCACAAATGACCCACAAGAAGACAGCAAACCCCCGCTAAGAGACTCTTACAATGTGTGTCGCATTCTCTCCCGGGTCTGGATTGCGATTGACTGCATCTGCAATACATGCATTCACTTCAAAATAAGCATTTATAAGAGGACTGTTTAAAGaccattcatgttattttttgtaatttcaaacCATAAgtaaattttatttaaacattgtagaAGCACTTTTTATTGTGACTGAAACTTGTCAACTTGCATCTCTAGTTCAAGTCATTCAAAGTGGAGCTCCAGCATGTGTAAACTTTGACAACACTTATTAAAGCAGTTATAAGTTTGTATACCTTCTATTTATAcacttcatacattttaatgaaggcAATTCAATGGTATACAAAGATTACCTTgtcaattatgttatttttggGAACTTTGACATTAAGTTATGTATACCAACTAAATTGGTAAATTGTTTCTCTAGTAAATGGACTTCCTAGTTTCCAGACTTCAGATCTTTCCATCATAAATCAGGATATATGGAAACAGAATTTACCAAATCAGTACAATAACTGGAAAGctatttaattggaaaatatatacatattttaaatttaaatccaaTAGTTTTATATTGGCGACCCCATAGCATTCAGCCAACAGAACGCCAACCAGAGATCACTTCTCCAGCCCTCCAACCCTCGCTTCAATCTCCTTCAGAGTGTCCTGCAGGCGCTTGGTGACCTGGGTCATTAAGCCGAAGCTCTCGTGAAAGCTGCCCATGCCACCCTGCGCCCAGGCGGCCCTCAACTCGCCAATCCACGTCAGCACACTGTCCAGTTCAGCCTGCACCTCCCTCTGCTCCTGCAGCTCCGCGAGCAAGGCCTGCTTGGCACACATCTCGGCCTGGTAGCGGCGCTGCAGACCGGCGAGCTCCccctccagctccagcagctgCTCACGCCTGTGGGGGTACTTCTGATGTGGGGCGTCCTCGGGCAGCAGGACGTTGGGGGGGACCTCCAGCACGCTGCTCTGGAGCAGGACCTCCATGCGGCCGGAGAGACGGTTGATGCGTTCCTGCAGGAGGGCCAGCAGCTGCCGAGTGCACTCCCGGGCCTGCCTGGTCACCTCGTCCCCTGCGTCCAGGCCCCCCAGCTTCTTGACGAGGACGGTCTCCACCGCGAGCAGGACCTCATACAGGCAGTCCTGGAAGGCAGTGTAGACCCGCAACATGCAGGTCTGAGGAGTGAAGCCGAAGAACTGAGCCTCGTACAGCTTCAAGGACTCGGCCACAGACTGGGGCAGGGGCTCCACT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07935 IFT22, RABL5; intraflagellar transport protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 778927 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1010261 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1050347 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 1317138 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1441450 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 38379 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 40379 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 174335 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 335384 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 428518 5741492 ~ 5748572 (-) True G153248
AMCG00005618 mRNA downstream 727 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005619 mRNA downstream 14106 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005586 mRNA downstream 41981 5249374 ~ 5268678 (-) True AMCG00005586
AMCG00005587 mRNA downstream 66337 5241801 ~ 5244322 (-) True AMCG00005587
AMCG00005588 mRNA downstream 104078 5195219 ~ 5206581 (-) True AMCG00005588
AMCG00005620 mRNA upstream 4924 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005616 mRNA upstream 31535 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005574 mRNA upstream 59487 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005576 mRNA upstream 131187 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005575 mRNA upstream 147945 5460919 ~ 5467836 (-) True AMCG00005575
TU192831 other downstream 8461 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1020767 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2219945 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2434650 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2980975 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 768261 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1177281 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2472580 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2686362 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2778774 8091748 ~ 8124685 (-) True G153806

Expression Profile