RNA id: AMCG00005620


Basic Information

Item Value
RNA id AMCG00005620
length 4379
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00005620
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5317898 ~ 5337528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCGCAGCATCTCGCCGAACAGCTTCTCGGTCTCCTGCAGCGCCCTCTTCGCCGAGCTCTGGTTGAGGAAGGAAAATGGTCACGATGCAGTGAGCCGATCTCACAAGAAGCTGCTGGGGGTGACGCAGACGGGCATCCACCATAAATGCCAGGAGAGGACGAAGGAGCTGGAAGATCTGAAAGCCGCAGTGGATTCTCTCAAGAATTTCAATTCCCTCTCTGCCCCTACCGACGATGGATTCCTACCCAGAGTCACGGTCAACCCAGACTTCTCTTTCGGTGCTGTGAGGAGAGCAGTCTCTGAAATTAAAGACCGCCTGGAGGAGATCAGCCGGGACGAATTAATGAAGATCTCCAAATCAGtgAATGAAACCCCAGTCTACAATATGGAGAACAGGATCAAAGAAAAACTTGTCAGGGTGAGTGAAGTTTCAATCGACACCGTTCAAGCCCCGGAACCCAAGAGCCGATCTGACTTTCTGAAATACTTCTGTCAGCTGAGAATGGACACCAACACAGCCTACCGAGAGCTGCATCTATCGGACGGGAACAGAAAGGTGACCCGGACCAGAGACATCCAGGCCTATCCGGACCACCCCGAGAGATTCGACAGCTTCGCCCAGGTGCTGTGCCGGGAGGCCCTGAGTGGCAAGCGCTACTACTGGGAAATCGAGTGGAGCGGCGAGTTCTCCACCGGAGTCACGTACAAAGGGATCAGCAGGAAGGGGAAGGGCTCCCTGTGTCTCCTGGGCTACAACGATAAGTCCTGGAGTCTCCTTTGCTCCGAATCAGGTTACTCCGCCTGGCACAACCGGGAGGACAAGCGCATAAACGCGGCCCACTCCCCCCGGATCGGAGTGTACCTGGACCACACTGCTGGCGTCCTGTCCTTCTACAGCATTTCCGAGACCATGACTCTGCTTCACAGGTTCGAGACTAAGTTCACTGAGCCGCTGTACCCTGGGTTCGGGGTTGGGACCTCGGTGAAGATCTGTCAGCTCAAATAAGCCCTCTAGTGGAGGTGTATAGCAGCCTTAAACCCCCTACAATGTCCAGtcttttggtttttggtttgcTCCACTTATTCAGAGCAGCTGTGTATTATTGTGTCCAAGTTAATAGGTTTTCCAAGTCTCTTCTTATTGACTATTATTCCACCTGTAAAACCTGCCCAAGGACGGTGGCTGTATAGGACTAATGTTATCGAGTCCTGCTCTGTGCCTTCTCTCATTACTGTagtatcaatttatttttaaatcagatgtATTCTATCACATTTCATTCAACACAATATTTCCGACAGGCTCAGAGGCACAGAAAGCAAGCGTCTGCACAAATAATTATACCTGCTTACGTCAAAAGTCATTTCATGTATCCCCTCTGTAGTCTTCTTCACCCGATTCATAATCTCTTCCGCTACTCCCAAATTATAATCAAAACTGTgaatctctctgtctgtctatgacCGCCTTGTTTACGCAAAAGACTGGAAatcacatgcacacaaaaaaaaaattgcattatttttttcaatacatttttttaaaataaagtaatggttttattttgattcctTGAACCATTTGCCTATCTTTCTGCAGTTGGTATCTTCCTGTGTGGATGACTTGGTGAACTAAGGTTATACAGTACGGGGACACTCTTTCCACATTCACCACAAGATGGGaggattaaataataaactttgtaggtggaaaagagaaactgcagatcgaatacatttttacagaagTGAATTAACTTTACACACTTAAAATAAGGGCTGTTTCTGAAAACCTGAAGTCACCTTTAGTGTATTGGGTATATACAGACATATAATGACGtcatacattcatatttcaatttaataaaacaaaaaattgacCAACCAAATAAATAGCCACCAGTTTATTTACATGGACAAGATAACGTTgctcatattaaaatgattatctGTTCACATACATCTGTAACTGGAATGCGGTTTAAGGAGACGCAGCGTTCTTAACATTGACACTGTTTACAGGAACCACACCTTGCAGTTGTACACAGACGCGCACattgtgtattaaaaacagaactgcTGTACATTGAACTAAAtcaacatattaataataataatagatatataaatataggggTTAAAAAACTATCAATTATATCACGTTATAAATTCCACTACACTGGATTTGGAAATttcaacatttcagtttttgtatcTAAACACTTGGAGACATTATTCTCTGTTGTACAATGGTGTTAGACAAACCTGAGCTTTCATGCAGGCTGTGGCAGAAACCGTTCAGGTTTTCTGGTATGTTTTGATTAAAGGCACAATCCTATGGAAGACTTCACAACAAGCACATCTACTAAACTGTACCATGttaataactgaaataacattttgaggtggtgtaaattattaaatgactGCAGTGCTCTGAATGAGTTAAGAcctattgtatttataatttgaaaattcTCAGatggtttgtgtattttattggtattgcagtattttgtaaaatgagtTCCAGGGGCCTAAGTCCGTGCAGGCTCAGTATCGCAGATAATATCCTGAACCTGTGAAATGTTATCTGCCGCCTTCCAGGGGtgaaatgcaaagcattattttacattctatAGATTTTCTCTCATTTCGTGGCTCAGCCTGTGCAAAACTGCAATATTAGCTTTCAGGGAATGCCCCTGTTCGCAAATCTCGGATGACAAGTCTGTTATTACTCCTCTTTTTGAACAGCTCATGCACCATCTCTCCACACATCCCTCCTTTAAAGAAAGCACCCTTCGCCAGGGACCAGGAACTCCCTGTGAACCCAGATCCCAGAGAAACCAGTCCCCTCTTTTCCTCTGTGAGCGATCTGAGAATTCCAAACTGACTCAAGCCGTCTCCGCAGTCGGACCACTGTTGCAGTTTCTCTTTCCCCACCAGCGGACCCCTCTCCTCACACAAGGCGTCAATACTAGGATTTCCCCTCTGAGTGGCTCTGTAGGTGGTTCTTCAGGCTAACCCTGTGCGTGAAGCTCTTCTCACACTGGTCACACTTGAACGGCTTCTCCCCAGTGTGAACCCGCAGGTGGGACTTCAGGTTCCCCGGCTGGTTGAAGCTCCGGTCGCACAGGTGGCACTGGTAGGGCTTCTCCCCCTTGTGGATGTTCTCGTGCCGGCGCAGGTGTTGCAGGAGACTGAAGCTCTTCCCGCAGTAGCTGCAGATGTGGGGCTTCTCCCCCGTGTGCAGCTGCAGGTGGGTCCTCAGGCTCTGCTTCTCGGTGAATTTGTTGCCGCACTGGTGGCACTGGTAGGGCTTCTCCCCGGAGTGAGACCGCAGGTGCTTGACCATGCTCTCCGAGCGGTTGAAGGCTTTCAAGCACACCTTGCAGGTGTACGGCTTCTCCCCAGTGTGTGTCCGCTGGTGGCGCTTCATGGACTGCAGCTGGCTGAAGGTCTTGCCACACTCGCCGCAGCGGTGCGGTTTCACCCCCGTGTGGATCTGCCGGTGGTTGTTCAGGTCCTTCAGGTGGCTGAACTTCTTGCCGCAGTCGTGGCACAGGTAGGGTTTCTCCCCCGTGTGGTATCGGTAGTGGTACTGGAGGTAGCTCAGCTGCCTGAAGGTCTTCCCACACTCGCTGCAGCAGAAGGGCTTCTCTCCCGTGTGAATCCGCTGGTGCTCCTTCAGACGCCCGAGGAACTTGAAAGACTTCCCGCACTCGGCGCACTGATGGGCACTTCTCTCCTTCCTGGGTTTCAAGTGGGGAACAGGCCGCGACTTCTGAAGCTCTCCGGCAGTGGAAGGGAGGCATTCCGCCCCCGGACTTTGCCCACCATCCCCCCGCGGAGATGACCGCGGCCCCTCGTCGCAGCTAAAacccagctcctcctcctcctccttcacgACAATGTGCAGGCCTTCGTAGTCTTCATCTTTCACGGGCGCCTCGTCAGGCTGCGGTGCTTCACATTTGATGAAGACAGATTCCAAGTCCACAAATTTCTTTGGGTTGGTGAAAGAGCCGGGCCCGGGGAGCTCGTGGTTCTCCTGGACCAACTCCATTGGCCCAGTATTTCAGGAGAATCGGCTACTTCAACACCCCAGggctgaaaataacatttgactgagagaaagaagaaatacCTCTCTGTGTGACTAGCTGGATGTCTCTCAGTCTTCATGGCTTGCTGGATGCATCTCTGACAAGCAAACGTCTATAACTAGAACTCTGCTTATCCATGGCTGTGATCCACTGTCCTCCAGCACATGTGCGTGACATGACAACCCCGAGGGACCAGTGCGTTTATTGTGATGtttcttgcttttattttccatcagCGACGCACCCGTCTACCAGGACAACGATC

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 786166 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1017500 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1057586 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 1324377 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1448689 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 13825 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 15825 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 149781 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 310830 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 403964 5741492 ~ 5748572 (-) True G153248
AMCG00005617 mRNA downstream 4924 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005618 mRNA downstream 7966 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005619 mRNA downstream 21345 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005586 mRNA downstream 49220 5249374 ~ 5268678 (-) True AMCG00005586
AMCG00005587 mRNA downstream 73576 5241801 ~ 5244322 (-) True AMCG00005587
AMCG00005616 mRNA upstream 6981 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005574 mRNA upstream 34933 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005576 mRNA upstream 106633 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005575 mRNA upstream 123391 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005625 mRNA upstream 170724 5508252 ~ 5513394 (-) True AMCG00005625
TU192831 other downstream 15700 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1028006 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2227184 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2441889 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2988214 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 743707 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1152727 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2448026 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2661808 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2754220 8091748 ~ 8124685 (-) True G153806

Expression Profile