RNA id: AMCG00005628


Basic Information

Item Value
RNA id AMCG00005628
length 796
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00005628
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6232159 ~ 6234028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCTGCAGGCCGGGCTCTGTTTACTTCAGCTGAGCGGAGAGGATCCTCATATCGCCGTTCAAACCGGGGAATCGGGACAGGCAGTCATGGCCACCGACATCGAGACCCTCGCCTCCTTCGAGACCGAGCACTACGACCAGTACGAGTATTATAACCTGATTGAGTACTCCTGCCACGCCGGGGGGAAGGGGAGAACCAAGCGAGAGATCGGCCTGCACACCAACCGCCACAGCCCCGCCGGACATGAGAGGAAGATCGCGGAGAAATTCCACAACAGCGAGCTGAAGCGCCGCAGGACCAAGAGCGCCTCTTCATAAGTTCTTGCTTTGCCGAAGAGATGGACGATAGACACCGATATGGACGACTGGACAGGACTCCCTTCACCGGCCAAGAGCTTGGGCTTCTCTCCAAGTGCCGAGTGGAGCTTGAGGACTGATATTGTGCTTCAGCGCCTGAGGGCTCTCCTTGAAACCCAGACACCTAATCAAGTTGATGTTTTTAATCTCTTGTGTCTTGTAGGTTGTAGACGTCAAGGCCTTTTCTCAATAAAACCAATATTTGCACCTTCTGGTATGGGAATAGTCAAggctgtgtttttagtttttatggtCACGGTTATGTGAGCAGATGCTGTATGTAGTACAACACGGTGTGTGTAGCCATATAAGCACTTTGTAGTTGTTCTCTGGAACACTTTTGATCAGGTGGTCAATGTTGGGATTCCGGGTGTGGTTCCCAAAAAAAGCTGcaatgcatttcatgtttttgaataaaaataaatgcttgtaaCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193069 lncRNA downstream 163145 6068787 ~ 6069014 (-) True G153324
TU193058 lncRNA downstream 183689 6048130 ~ 6048470 (-) True G153313
TU193002 lncRNA downstream 431253 5800648 ~ 5800906 (-) True G153272
TU192977 lncRNA downstream 483587 5741492 ~ 5748572 (-) True G153248
TU192961 lncRNA downstream 583450 5648358 ~ 5648709 (-) True G153236
TU193124 lncRNA upstream 108 6234128 ~ 6234359 (-) True G153373
TU193125 lncRNA upstream 528 6234548 ~ 6234858 (-) True G153374
TU193126 lncRNA upstream 1163 6235183 ~ 6235409 (-) True G153375
TU193131 lncRNA upstream 6382 6240402 ~ 6257172 (-) True G153379
TU193273 lncRNA upstream 326919 6560939 ~ 6563570 (-) True G153487
AMCG00005598 mRNA downstream 61861 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005601 mRNA downstream 159493 6070192 ~ 6072666 (-) True AMCG00005601
AMCG00005611 mRNA downstream 284842 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005610 mRNA downstream 301003 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005605 mRNA downstream 480721 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005629 mRNA upstream 13130 6247150 ~ 6255757 (-) True AMCG00005629
AMCG00005638 mRNA upstream 54449 6288469 ~ 6296947 (-) True AMCG00005638
AMCG00005642 mRNA upstream 71813 6305833 ~ 6309531 (-) True AMCG00005642
AMCG00005640 mRNA upstream 75536 6309556 ~ 6317063 (-) True AMCG00005640
AMCG00005639 mRNA upstream 92176 6326196 ~ 6328995 (-) True AMCG00005639
TU193087 other downstream 149293 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 929961 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1942267 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3141445 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3356150 2875286 ~ 2876009 (-) False AMCG00005491
TU193235 other upstream 256235 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1551534 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1765316 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1857728 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2856402 9090422 ~ 9092573 (-) True G154142

Expression Profile