RNA id: AMCG00005629


Basic Information

Item Value
RNA id AMCG00005629
length 1854
RNA type mRNA
GC content 0.59
exon number 12
gene id AMCG00005629
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6247150 ~ 6255757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTCCCCGCACAGCCGTCTCTCCTCacgctgctgtgtgtgttgtcgGTCTGCGGGGTCTGCGCGGCTCTGGACGGCGGGATGCTCTTCCCCAGGGAGTCGCCGTCCCGGGAGAGGAAGCTGCTGGACGGGGTGTGGAAGTTCAGAGCCGACTTCTCCAGCAGCAGGAACCGGGGCTTCGAGGAGACGTGGTTTAAACGGCGCCTGGCGGAGACAGGCGCTGTGATTGACATGCCCGTCCCAGCGAGCTTCAATGACATCACCCAGGACGCCCAGCTGCGGGACTTCGTTGGCTGGGTGTGGTACGAGAAGGAGGTGTGGGTGCCCGGGCGCTGGGGGTCCGACCCAGGGCAGCGCGTCGTGCTGCGAGTGGGCAGCGCTCATTACAACGCTATTGTCTGGGTCAATGGAAACCAGGTGACCCAGCATGTGGGAGGCCACTTGCCCTTTGAGGCCGACATCAGCGCCCTGATCCGCGAGGCACCCGGCCAGCCCTGCCGAGTCACCATTGCCGTCAACAACACCCTGACCCTCACCACGCTGCCACCGGGAACCATTCAGTACATGAAGGACCCCACAAAGTACCCACCTGGCTATTTCGTGCAGAATATCGACTTCGACTTCTTTAACTACGCTGGCGTCCATCGTCCGGTCCTCCTGTACACCACGCCCGTGGCCTATATCGATGACATCACCGTGCAGACGAGCTTCGCAGACAGTATGGGGGTCATAAACTACGAGGTGTCGATCCGGGGAGCCCAGGACCCAGCCGTGACCGTGACTCTGTCTGACGCCGAAGGCATGAGCGTCGCCACGGCCAGCGGACTGTCGGGGACTCTCAAAGTGGAGAATGTGAACCTTTGGTGGCCGTATCTAATGCATGAAAACCCAGGATATCTTTATTCTATGGAGGTCACCAAGAGCCAGTTTCTCATCAACAACAAGCCGTTCTACTTCCATGGCGTGAACAAACACGAGGATGCGGATATTCGAGGGAAGGGGCTGGACTGGCCGCTCATCGTGAAGGACTTCAACCTCCTGAAGTGGTTGGGAGCCAACTCCTTCCGCACCAGCCACTACCCGTACGCCGAGGAGATCCTGGACCTGTGTGACCAGCACGGCATCGTGGTGATTGATGAGTGCCCGGGGGTGGGCATCAAGGACATCCGCAGCTTCGGGAACGAGTCACTGGCGCACCACCTGGTCGTGATGGAGGAGCTGGTGCGGAGAGACAAGAACCACCCCTCTGTGGTCATGTGGTCCGTGGCCAACGAGCCGGCCGCTGAGATGCCCCCCGCAGACTTCTACTTCAAGTCAGTGATCCAACATACCAGATCGCTGGATCACTTCCGGCCCGTCACCTTCGTGTCTAACAGCAACTTCGCCCGAGACAAGGGGGCACCCTATGTGGACGTGATCTGTGTGAACAGCTATTTCTCCTGGTATCACGACCCCGGCCACCCCGAGCTCATCCCCATCCAGCTCAACACTCAGTTTGAGAACTGGTACAGCAAGTACAAGAAACCCATCATTCAGAGCGAATATGGAGCTGACGTCGTGCCGGGGTTACACATGGATCCTCCAATGATGTTCACAGAGGAGTACCAGAACACCGTGCTGCAGTATTACCACTCTGTGTTTGACCAGAAGAGGCAAAAATACCTCATTGGGGAACTCATCTGGAACTTTGCCGACTTCATGACAGCACAGACCATCACCCGCGTGGTCGGCAACAAGAAGGGCATCTTCACTCGTCAGCGGCAGCCCAAGGCCGGAGCCTTCGTCCTGAGGCAGCGCTACTGGCGTCTGGCGAACGAGACCGGACGCCTGCCCCCGTGGAACCGCTATCCG

Function

GO: NA

KEGG:

id description
K01195 uidA, GUSB; beta-glucuronidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193126 lncRNA downstream 11741 6235183 ~ 6235409 (-) True G153375
TU193125 lncRNA downstream 12292 6234548 ~ 6234858 (-) True G153374
TU193124 lncRNA downstream 12791 6234128 ~ 6234359 (-) True G153373
TU193123 lncRNA downstream 13122 6232166 ~ 6234028 (-) True AMCG00005628
TU193069 lncRNA downstream 178136 6068787 ~ 6069014 (-) True G153324
TU193273 lncRNA upstream 305182 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA upstream 306419 6562176 ~ 6563570 (-) False G153487
TU193332 lncRNA upstream 391559 6647316 ~ 6662496 (-) True G153514
TU193418 lncRNA upstream 679673 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 797048 7052805 ~ 7053559 (-) True G153638
AMCG00005628 mRNA downstream 13130 6232159 ~ 6234020 (-) False AMCG00005628
AMCG00005598 mRNA downstream 76852 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005601 mRNA downstream 174484 6070192 ~ 6072666 (-) True AMCG00005601
AMCG00005611 mRNA downstream 299833 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005610 mRNA downstream 315994 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005638 mRNA upstream 32712 6288469 ~ 6296947 (-) True AMCG00005638
AMCG00005642 mRNA upstream 50076 6305833 ~ 6309531 (-) True AMCG00005642
AMCG00005640 mRNA upstream 53799 6309556 ~ 6317063 (-) True AMCG00005640
AMCG00005639 mRNA upstream 70439 6326196 ~ 6328995 (-) True AMCG00005639
AMCG00005641 mRNA upstream 78530 6334287 ~ 6339833 (-) True AMCG00005641
TU193087 other downstream 164284 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 944952 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1957258 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3156436 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3371141 2875286 ~ 2876009 (-) False AMCG00005491
TU193235 other upstream 234498 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1529797 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1743579 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1835991 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2834665 9090422 ~ 9092573 (-) True G154142

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059872 True 5381 mRNA 0.43 12 NC_007116.7 2066262 ~ 2112030 (-)
grasscarp (Ctenopharyngodon idella) CI01000205_00671471_00689416.mRNA True 3281 mRNA 0.46 14 CI01000205 670152 ~ 689416 (-)