RNA id: AMCG00005631


Basic Information

Item Value
RNA id AMCG00005631
length 2848
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00005631
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6924049 ~ 6931866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggatggatggatggatggatgggatGGATGGATGCATGCATTGCGTGAAGCAGCACTTCGTGGGAAAGGTTACACAGCCGCGGCGCCCGCACTCGGAGGGCTGTGCCTGCAGTCCAAGTGGGAAGAAAACGGGGCTATGCAAATACACGGTAGGAGGATCTGTTCGCCAAACCCAGCCCACTAAAGTAATGCACAACACAGGGGCAATGCACTTCAGGCAGCCTGCGAGCTGGACATTTCATCATTATGGAAGTTTAAAACATGTCAAGCAGTGACTGGGGGTTTTAGGCTGGGAAAGAAGGCGACTTGCAGGCAACTTCACTCCGACCAGGTTGACTACAGCTGCGGCTCTTGCTCTTGGGCGAGCGCTTGTCCGCGGCGCGGCGCGATGGCTGGCTGTCGCGGCGGTGTCGCTTTGCATCGGGCCGGGAGGGTTGCTATTTTCGGAGGCACACATGGGAATGAGATGTCAGGGGTGACGCTGGTTAATCTGTGGATTAGAAACGCAGCGGAGATCCAGAGGAGCCGGGTGGAGATcagacccttcctcaccaacccCAGGTCTGTGGAGAAGTGCACCAGATATGTCGATACGGATCTGAACAGAGCCTTCACGCCAGAAAACCTCAGTGCTCCCAATTGCGAAGACCTGCCTTATGAAGTAAGAAGAGCTCAGGAAATCAATCAGATATTTGGACCAAAGGGTAGTCAGCAGGCCTATGATGTCATTTTTGATCTGCATAATACTACCTCTAACATGGGAGGCACTCTGATTCTAGAGAGCTCAGAGGATGACTTTAATCTTCAAATGGTTCGTTATATTAAGGATGCCATTGCCCCGGTCCCTTTTTATGTGCTGCTGACTGAACACCCAGTTCTTCAGTATGCAACCACACGATCTGTAGCCAAGCACCCGATTGGTCTGGAAGTTGGTCCACAGCCTCAAGGTGTCATACGAGGCAACATTTTGGAGACCATGAGGTCGATACTGAAACATGCCTTGGATTTCATAGAGCTTTTCAACGGAGGGACGGAGTTCCCCCCATGCACAGTGGATGTGTACACGGTCTCGGAGAGAGTGGATTACCCCAGAGATGAAGAGAGAAACATCACGGCTATGGTCCACCCTGATCTGCAGGACCACGACTGGGAGCCCCTAAATCCAGGTGACCCTATATTCCTGACCTTTGACGGGAGAACTCTCTACTATGAGGGCGACAGCACAGTGTTCCCAACGTTCATCAACGAGGCGGCCTATTACGAGAAACAGCAAGCTTTTGTCACGACTAGAAGAGATACACTAAAGGCTAATGGTATAAAGGCTCTAAACACATAGAGCCGTTCCCCCTGGAACGCCACACGGAATTTCAGGTCCCAATTTCTCATATCACACCCCCCCATAAACACCactcatatttttaaaaggtataAAGAACAGATACGATACCTTGTACAACTGTAATTCTGTCACTTACGAAATTCTGTCATTTCTTGTGTTTGCCAACTCTTGTGTAACCATCTTTTGCACTAGTACTATCACCACATAAATGATAACTCTAGAAATACATGCTTTCGAGAAAACGATCACACAATGCAGTGGCCAGCATTGTAGACACTAACAACACATGACATGCCACTAACACTGACGTTTACTATCGGCATCATCTTAGAATCGGAtcactgtttgtgtttgtttgtgtttctgcacAACACATAGAGTTCTTTGAATTCAGATTCCcccaaatcaatcaaaacagcTTCTATGAAGACTAAATATACCTGGAGCTGCAAAGCCATTTCAGACCAGATATTTAGCTGCATAGTAGGAAGTTgggtaacattttatattacgCTGTCATTAAATAGTTACCAAAAACTATTGTGTTTAAATTTTGGGGGGGATAAATGatatattataaaggtttataGATTGTTTATGTATGGAATTATTAATGGATGTTCTACTAGTAATCGGTACCTCATGATTCATACTTGACCATGTGCCCTGTCCTATTCAGGGAGCTACAGTATCTTAATCACTTTGGGGACAATCATATCACATCGATACATCAAATTCTGGAATGCACTTAAGAATCATTACAGTAGTCGAACCAGTTAATTGCATAGCTTATGAAAATCATGTACTGTATCGTCACTCAGATGAACTCCTCATTTCTCATGCTCCTGTGCAAGTGCCTATCACGATTTAACACTATGCTGTGAGACAGGCTTGACAGTACTGTACAAACTTGCTCCACTTTTTATCCTAACTTATATAAAGACGAAATTTGAAATTGAGGTATTTCTTCTCTTATCGGTTTTGTACCACAAGGTGGTGCAAAGTGTAGGCAGTTTCTGTAAGCCTGTCCATTTCTGTCCTATAGCCTTAAATTAGTATGAATTTGAAATCAATAGAACATTTTATAACACTGTGaaactttaattttataatgGAAGGGAGATTTTTAAGGAGTAGTATTTTAGTAAAGTTGATCATTCTCAGTACTAATGTAATTCTTTTGTCTCAGAAATGAAATACTGTAAAACCGAAGCTGGAAAGCTGGTCACTGTAATAGTTTTAACTGCGATGGTTCAATGTCTCAGGTAGTGCTATAATAGATTAGTAACAGTGCATTGTTTAAATCTGAAAACCTCTGAGAGTTAGACACCTTGTAGGTTTTGTTTAGAAAcatatactattattatcagTACCTAGTGATTGCATAATTGTACTCTACACCTTTTTGAATACGTAGATtgtttaaatagaaataaaaaagattatTTGAATACTTAATTcaatataactatatatttatatctctCATGTTTCAACAGTACATCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function

KEGG:

id description
K01437 ASPA, aspA; aspartoacylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193332 lncRNA downstream 261553 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 360479 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 360479 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 666877 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 688640 6235183 ~ 6235409 (-) True G153375
TU193418 lncRNA upstream 3564 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 120939 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 207314 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 247762 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 346638 7278504 ~ 7278765 (-) True G153681
AMCG00005632 mRNA downstream 3188 6909318 ~ 6920861 (-) True AMCG00005632
AMCG00005655 mRNA downstream 51183 6825929 ~ 6872866 (-) True AMCG00005655
AMCG00005654 mRNA downstream 123210 6787860 ~ 6800839 (-) True AMCG00005654
AMCG00005645 mRNA downstream 180828 6722947 ~ 6743221 (-) True AMCG00005645
AMCG00005646 mRNA downstream 212063 6706658 ~ 6711986 (-) True AMCG00005646
AMCG00005633 mRNA upstream 7946 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005678 mRNA upstream 84682 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005676 mRNA upstream 86079 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005677 mRNA upstream 92319 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005680 mRNA upstream 105817 7037683 ~ 7048482 (-) True AMCG00005680
TU193235 other downstream 427478 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 841183 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1621851 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2634157 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3833335 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 853688 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1067470 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1159882 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2158556 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2493424 9425290 ~ 9434940 (-) True G154250

Expression Profile