RNA id: AMCG00005632


Basic Information

Item Value
RNA id AMCG00005632
length 1101
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00005632
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6909318 ~ 6920861 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGACCCCGAGGAGTTTGAGAAACACTGGAAGAATGAGTTCCCCGACGGGGAGGTGCCCAGGATGGAGCTGAGCTCCGTGCAGGATATCGAAAAGGAGCTGGAGAAATGCAAGAGCCACCTCAAGACGCTGCAGCAGGCGCTGTCGGAGGAGAAATTTAAAGTGATCTACCTCCAGGCCACCATTGCTCAGCAGAAGAAGAGTTACGACCATGAGAGGTGGGAGAGCAGCGGAAAGGGGGGGAAGTTGGAGCTGCCAGCTGCCCCGCTGGAAAGTCAGGGCAAGAAGGCAGCCGGACCCCAGGACAAGCCTCACCTGCTCAGGATGCCCTTCATGAGGAGAGCCCCGGCACATGACAGCGGCAGGGCGGCCGAGCACCTCTGGGAGAACCCGCCCATGGCCAAGGAGCGGGACCTTCCCAGGAGCCTCCGGGGCGCGGCGGACAGGCACGGCATGGTGGTGCCCGGGCTGCGACGCACCAAGGGGTCCGTGGAGAGAGGCTCCCCGCCGGCCGCCAGGACCTCGGAGCCGGATGGCAACTGCGTCAGCGCGCCGGCCGAGGAGAAGCATGACGCCGGCGGGGATGTCAGCGACCACGAGTACGAGGACGTGGATCTCAACGAGGGTTTTGTGCAGGTCAACCTGGTGACGCCCAAGATCAACCTGCTGGACGGCCAGCCGGGGGGTCCCCACCGGCCGGCGCTGAGGGGGTTCCGGCAGAGCAGGGACTTGGATTCCGGGGACGAGGGCCGGCTGTCCCCAGGGGCCCTGCAGGTGCCATACCGGTCCCCCCGGGGGTCTGGGTACAGCACGCCCGACAGGAGGAGCGACGGGTACCTGAGCTCGGACCACGACGACTCATCCGTAGaATACTTTCTGTCTTCCCAGATCTTGGGTTTGGGTCAGATGCAGCAGTCGAAGATGAGTGTGCTGCAGTTTTGGCGCGACGCTTTTCTGTACAGCTTTAGTCGTGTGCCCACTAAACTCTCCGCGTTTTTCACTTCCCTCTGTACGGTCACCGTCCATTGTGACAGCAGAGAAACCGCCAGACGAGAAACCCCGAGATGTGGCTTCGTGCAACTGCACAGGCAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193332 lncRNA downstream 246822 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 345748 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 345748 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 652146 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 673909 6235183 ~ 6235409 (-) True G153375
TU193418 lncRNA upstream 14569 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 131944 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 218319 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 258767 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 357643 7278504 ~ 7278765 (-) True G153681
AMCG00005655 mRNA downstream 36452 6825929 ~ 6872866 (-) True AMCG00005655
AMCG00005654 mRNA downstream 108479 6787860 ~ 6800839 (-) True AMCG00005654
AMCG00005645 mRNA downstream 166097 6722947 ~ 6743221 (-) True AMCG00005645
AMCG00005646 mRNA downstream 197332 6706658 ~ 6711986 (-) True AMCG00005646
AMCG00005644 mRNA downstream 204958 6690451 ~ 6704360 (-) True AMCG00005644
AMCG00005631 mRNA upstream 3188 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005633 mRNA upstream 18951 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005678 mRNA upstream 95687 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005676 mRNA upstream 97084 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005677 mRNA upstream 103324 7024185 ~ 7037056 (-) True AMCG00005677
TU193235 other downstream 412747 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 826452 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1607120 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2619426 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3818604 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 864693 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1078475 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1170887 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2169561 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2504429 9425290 ~ 9434940 (-) True G154250

Expression Profile