RNA id: AMCG00005634



Basic Information


Item Value
RNA id AMCG00005634
length 1059
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00005634
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6300937 ~ 6302204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGACTATAGTTTATTGCAATGCTTCTGAAGACAAGACAACCGACATATGGAGTACCCAGACTGTGGTCGTCCTTGGCACGGTGCAGGTCCTGGCCAATTCGGTCTCTTTGGTGTTGAACTGCGCggtgataataatattaatacgcGGACGGCAATATCAGCGACCCATCTTCATCCTTTTTTACAGCTTAGGCTTTTCGGATCTGTTGACCAGCTTCTCTTCGCTCTATGTGTCCATGCTGTTCATGATGAAGCCGGACAGCACTATCTACGGCTCTGAGCAGCTTCTCAAGGGCTACTCTGCCTTTTCAGTAGCCATCCTGTCCAGCCTTTACAATCTCATGAGCATTGGGATTGAGCGGTACCTCTCTGTGACTGACTATGTGACAACAAGGCATAAGGTCACCAAGTGGCAAAGCCTGCTTGCGGCTACAGTCAACTGGGCTCTTGCCATCTTGCTCGGCTGTCTGCCGCTGGTCGGTTGGGACTGCTTGGAGTACGGCGACACGTCCAACCTCTACAGTCCGTTGTGTATGAGCTACTTGATCTTCGTTACCATCCCCAACGCGATAGCCACCTTTGTCATCCTGATTGGCACCTACGTGACCATCATTGTCAAgctgagaaaacacaaaaccgCCATCACGCCTTACGGGGGTGCAATTGTTCACAATCACAAGCAGGCGGAGATGCGAGTGACCAGGACAAGTGTCTTAATCTGGGTCTTTGCTATGGTCTCCTACTTGCCATTTTTGGCCGGAGTGGTTTGGGACGCGACCAATAGTCTATGTCCGCAGGAGGTCACCACGAATATTTTTGTGTTCAGAAATGTGGCCAGTATTATGTTGGCCGTCAACTCCATCGGAAACCCAGTTTTGTATACTCTCAAATGTAAAAGCCTGGGGAACACCATCAACTCACTAAAATGCACCCCCGCTCCGCCTACAGAGCAAAGCAATTCGCCGGTCAGCACCGCGGACAGCGCCAGCGCCGGCTGTTCAAAGACTGCGTTCAGGGACTGCATTCAGGACAGCGCCGTCACTGAGACGACTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU193099 lncRNA upstream 66890 6232159 ~ 6234047 (+) True G153348
TU193057 lncRNA upstream 252499 6048130 ~ 6048438 (+) True G153312
TU193006 lncRNA upstream 345486 5916835 ~ 5955451 (+) True G153274
TU193001 lncRNA upstream 500045 5800648 ~ 5800892 (+) True G153271
TU192858 lncRNA upstream 855680 5444379 ~ 5445257 (+) True G153154
TU193146 lncRNA downstream 31048 6333252 ~ 6393728 (+) True G153390
TU193199 lncRNA downstream 133260 6435464 ~ 6436739 (+) False AMCG00005647
TU193268 lncRNA downstream 258695 6560899 ~ 6563478 (+) True G153485
TU193312 lncRNA downstream 306439 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA downstream 306439 6608643 ~ 6662480 (+) False AMCG00005663
AMCG00005627 mRNA upstream 60325 6235634 ~ 6240612 (+) True AMCG00005627
AMCG00005626 mRNA upstream 71057 6205818 ~ 6229880 (+) True AMCG00005626
AMCG00005597 mRNA upstream 145563 6151299 ~ 6155374 (+) True AMCG00005597
AMCG00005599 mRNA upstream 223211 6073226 ~ 6077726 (+) True AMCG00005599
AMCG00005600 mRNA upstream 255202 6004392 ~ 6045735 (+) True AMCG00005600
AMCG00005636 mRNA downstream 38720 6340924 ~ 6343422 (+) True AMCG00005636
AMCG00005635 mRNA downstream 42708 6344912 ~ 6354314 (+) True AMCG00005635
AMCG00005637 mRNA downstream 53729 6355933 ~ 6357648 (+) True AMCG00005637
AMCG00005650 mRNA downstream 73898 6376102 ~ 6388493 (+) True AMCG00005650
AMCG00005649 mRNA downstream 98414 6400618 ~ 6424353 (+) True AMCG00005649
TU192781 other upstream 1079022 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1739453 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2015974 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 3030098 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 185514 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 958473 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1913686 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2201991 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3133696 9435900 ~ 9438269 (+) True G154251

Expression Profile