RNA id: AMCG00005637


Basic Information

Item Value
RNA id AMCG00005637
length 465
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00005637
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6355933 ~ 6357648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCGCTGGAAGGGCCGAGTGGCGCTGGTGACGGGCGCGTCGGTGGGCATCGGGGCGGCGGTGGCCCGGGCTCTGGTCCAGCACGGCATGAAGGTGGTGGGCTGCGCCAGGAGTGTGGACAAGATCGAGGCTTTGAGCTGTATCTCCAGTCTTGTGATCACAGTGCATTGTGCTGGAGTTCATGAGCAGTGTATCGGTGCCGATTGTGCTATCAGCGCGTCTGCAGCGTGGGGAGTGGTGCTCGCCCTGCCCTCTATCGGCGGGCCATCGTTGGAGCTGAGTCCTTGCGTGACAGCAGGCAGCCGGCTGGGTCGATCTGTGTCGGAGGTCGACGTGACCCAGTGTAGAAGCTGCGCTCTGCCTCTCCTGCCTCCGTCCTCCTCTCACCTGTGTCTTGCCCTTTCGGCGTGTCCGAATCAATCCCGAGAAAGGGGCTTATGTGCGTTAGACCACGAGGAATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193133 lncRNA upstream 24562 6282988 ~ 6331371 (+) True G153381
TU193099 lncRNA upstream 121886 6232159 ~ 6234047 (+) True G153348
TU193057 lncRNA upstream 307495 6048130 ~ 6048438 (+) True G153312
TU193006 lncRNA upstream 400482 5916835 ~ 5955451 (+) True G153274
TU193001 lncRNA upstream 555041 5800648 ~ 5800892 (+) True G153271
TU193199 lncRNA downstream 77816 6435464 ~ 6436739 (+) False AMCG00005647
TU193268 lncRNA downstream 203251 6560899 ~ 6563478 (+) True G153485
TU193312 lncRNA downstream 250995 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA downstream 250995 6608643 ~ 6662480 (+) False AMCG00005663
TU193304 lncRNA downstream 256803 6614451 ~ 6662480 (+) False AMCG00005663
AMCG00005635 mRNA upstream 1619 6344912 ~ 6354314 (+) True AMCG00005635
AMCG00005636 mRNA upstream 12511 6340924 ~ 6343422 (+) True AMCG00005636
AMCG00005634 mRNA upstream 53729 6300937 ~ 6302204 (+) True AMCG00005634
AMCG00005627 mRNA upstream 115321 6235634 ~ 6240612 (+) True AMCG00005627
AMCG00005626 mRNA upstream 126053 6205818 ~ 6229880 (+) True AMCG00005626
AMCG00005650 mRNA downstream 18454 6376102 ~ 6388493 (+) True AMCG00005650
AMCG00005649 mRNA downstream 42970 6400618 ~ 6424353 (+) True AMCG00005649
AMCG00005647 mRNA downstream 76873 6434521 ~ 6437078 (+) True AMCG00005647
AMCG00005648 mRNA downstream 109962 6467610 ~ 6476823 (+) True AMCG00005648
AMCG00005667 mRNA downstream 130263 6487911 ~ 6488782 (+) False AMCG00005667
TU192781 other upstream 1134018 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1794449 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2070970 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 3085094 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 130070 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 903029 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1858242 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2146547 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3078252 9435900 ~ 9438269 (+) True G154251

Expression Profile