RNA id: AMCG00005638


Basic Information

Item Value
RNA id AMCG00005638
length 2730
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00005638
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6288469 ~ 6296947 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCACTTGTAAGGGTCGACTGGTGGAGccgaagagaaagagagaaaatgcgTCAGatccttttttccctcacacTTGCCTCCTTGCTGTGCATCAGCTCAGGCGCAGGACCAAAGGAATGGAACAAGGTTCACCCAGATTGTGCTGGAGACAATCAGTCTCCCATCAACATCATAACTAAGAGAACATTGAGAAACAATGACCTCATGACGTTCACATTCACAGACTACGACAAGCAGACAATCGCACTCATGAAGAACAACGGCCACTCGGTTCAGGTTTCTCTTCCCACTGGTAAGAAGATCAGTGGAGGCAATCTGACGACATACAAGGCTTTACAGTTCCACCTCCACTGGGGGACTGATGGAGGGCCCGGATCGGAGCACACCATCGATGGGGAGCAGTTTCCCATGGAGCTGCATATTGTTCACATTAAAGACACGCACAGTAGTTTGGATCAGGCCGTGAAGGAAAAGGATGGCATTGCGGTCCTGGGATTCTTTTACCAGGAGTCGCCTGAGGAGAATAAGAACTACACAAAACTCATTGATGCACTAGACAAAATCACAGATACGGGCTTGAACACCACGCTGCAGGGTTTGAGACTGGACGAACTCATTCCTGCCCCAGAGAACCTGACCAAGTATTATCGCTATGAAGGATCCCTCACGACTCCAGATTGCTCTGAGGCCGTGGTGTGGACTGTGTTCGAGAACCCGATTCCACTCAGCAAAGAGCAGATTTTAGCTTTCACAAAGCTGAACTTTAAAGACATGAAGTCCATGGTTGATACATTCAGGCCCGTTCAAAAACTGAACAACCGGATAGTGTACCGATCTGGAAGTAATGTGGTTGTGGCCAGCATGGCTCTGTTGGCTGCGTCTCTTCTTTCCACTGTTGGGGTGTCCTGGCTGCACTAAGGAAACATCATCTACTGAGGTTGTCCAAATGATGAGAGAAAAAGCCTCCTTTAGGCGAACTTTGTCAAGCCATTTTGACACTGTATATACTGGATTTTCTTATGATCTCAAGCCACTACAGTTTGTTATATAAGTGattcataaacaaaatataaggaTCTGGTGAACACCCAGGTTCCATTTCAGCTCCACTGAATTTGAATTGCACTCTGTCACCCTATCATTGAATCAGCTGGGCCTTCTGAAAGAAATGGGTCTCCTATTTTGAAAGCATGGACCTTAGCAAGGGGATCACGTGTAGTGTGAGTTTCCCATCAGTAATTAACACCAAGTTATTTTCCTGCAGAACATGCAATGCATACTGCACACACGCTAGAGACCAGGCCTTCCTTGCATAGCCAAGTAAAGAGATTGGCTGATCTCATGCTGcattttgctttctctctcGTTACTTTTGAcctttatgttttctttatgaATCACAGCGTGAGCGAGTAATGAAACACCATCGAAGAGCATTTTGTTAATGTCTCTGGGACTCtgtgagtgtatattttgaaCCAGTCTACGTCGCTGTTGGTTTAGTCTCCAAAGCGTAGAGAGAACAGATGAGCAATGATGAGGGTTCGTGCGGCAGAGACTGGGGAACACCTTATCACAAGTGTCCGTCCTCTCATTGTGATTGTAGCACATTATTGTATTGAGACGGGCGCTGAATTTGCCTGCACACAATGTAAGCAGAGATTCACGCCTCGTTTGCATTGGTGTGCTTTATTTCTCTGACTCAAGGAGAATGAATCCTGGGATGACAATGTGGGCCACAATAATGCCCTGTATTGGGAAAGCCCTTGGAGTGAGTGAaacaggtgtgtgttattctcTCACTGGTTCAAAGTATAGTCAAAGTATATAGAGGGAATTGAAGAAAAAGGTGAAGAAATTGTACATATCTAGAAGCTAACTGACTAACTGAAGGAAGAGCCTAGTTAGGCCTGTGAAACATGGAAGTGCTTGTTACAAGTCAGTTTCTTTCTTATTCCTCTAAAGTGCCCCAGTGTAATGCAGTACGATCATGATTGTTTTTACTGGGTCCTGCTTTTCTGTGGTTCTGCAGCAGATGTGGGTGACCTACCTACCTCTGAGCGTTTGTAGAGAGCAAATATTGAATTGCTCCAGCTGACAGGTATCTGTGCTTTTTCTCATCCTTGAATTAAAAAAGACCAGGGTAAAACTGATGCTTCAATTGACCTCATCAAACCCAATGTCAGGCTGTGTAGTCTTAGGGCGACAATGTTACATCTCACAGGATCGAATTTCCAAGTTCCTGCTCGTCTTGTATCACGATTAATCAAAGGATAGGTATATTTATTTGACCTCACATTTAATAACTGAATGACCATATTTCTGctgacatttttcactttttatttatctttggtTATgggttgcatttaaattattacatatataaatgtatgcataaaatatataaattattttgttatttgtatgaTGCAGACTCTACTGAGTCTGTTTGAACCAACCAAAAAAGACCAGCAACAAAGCTTATACGATTATGATGCAATAGGACCATAGCAAATGGTTGTCGGCACAGAATAATGTTATTGTACGCAGGTATGAAATGTTTGTATGTACAGGGCAATAATCTTAATGCTTGAATtagaataataaacacattgttaCTGTTGGTATTGCTACTGTTAGGTAATATAGAAAATACCTGGAATAATAATGAGAATGTGTTGGTTTTGAAAACAattgaagaataaaaaatgtcattttattgtta

Function

GO: NA

KEGG:

id description
K18246 CA4; carbonic anhydrase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193131 lncRNA downstream 31297 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 53060 6235183 ~ 6235409 (-) True G153375
TU193125 lncRNA downstream 53611 6234548 ~ 6234858 (-) True G153374
TU193124 lncRNA downstream 54110 6234128 ~ 6234359 (-) True G153373
TU193123 lncRNA downstream 54441 6232166 ~ 6234028 (-) True AMCG00005628
TU193273 lncRNA upstream 263992 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA upstream 265229 6562176 ~ 6563570 (-) False G153487
TU193332 lncRNA upstream 350369 6647316 ~ 6662496 (-) True G153514
TU193418 lncRNA upstream 638483 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 755858 7052805 ~ 7053559 (-) True G153638
AMCG00005629 mRNA downstream 32712 6247150 ~ 6255757 (-) True AMCG00005629
AMCG00005628 mRNA downstream 54449 6232159 ~ 6234020 (-) False AMCG00005628
AMCG00005598 mRNA downstream 118171 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005601 mRNA downstream 215803 6070192 ~ 6072666 (-) True AMCG00005601
AMCG00005611 mRNA downstream 341152 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005642 mRNA upstream 8886 6305833 ~ 6309531 (-) True AMCG00005642
AMCG00005640 mRNA upstream 12609 6309556 ~ 6317063 (-) True AMCG00005640
AMCG00005639 mRNA upstream 29249 6326196 ~ 6328995 (-) True AMCG00005639
AMCG00005641 mRNA upstream 37340 6334287 ~ 6339833 (-) True AMCG00005641
AMCG00005653 mRNA upstream 93349 6390296 ~ 6398509 (-) True AMCG00005653
TU193087 other downstream 205603 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 986271 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1998577 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3197755 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3412460 2875286 ~ 2876009 (-) False AMCG00005491
TU193235 other upstream 193308 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1488607 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1702389 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1794801 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2793475 9090422 ~ 9092573 (-) True G154142

Expression Profile