RNA id: AMCG00005640


Basic Information

Item Value
RNA id AMCG00005640
length 1260
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00005640
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6309556 ~ 6317063 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAATGGCTTCACTATAGAGGCTCCATCTCATCAGCCCTCTGTCATTGACTGCTTGGACAGGGAGGTCAAAGACTTCTTGATTGATGAAGGTCAATTACACACCTGTGCTGACCTCACCAAGCTGAACTCTGTCACCGCAACTACAGTTCTGAAATGCCTGGATGTGAGGTTCAGTGCCGGGGAATTCTACACTCACGCCGGCTGCTCTCTGGTCGCTGTGAACCCCTTCCAGCCCATTCCTCATCTTTACACTCAGGAGAAGATGAAGGAATATCACAGCGCCCCCCAGCCACAGGAATGCAAGCCTCACATATTCACTGTGGCTGAGCAGGCATACAGGAATGTACAGGGCCAAGTGGAGCCGGTGAACCAGTCCATTATCGTCAGCGGTGAGAGCGGCGCTGGAAAGACCTGGACCTCCCGCTGCCTCATGAAGTACTACGCTACTGTGGCAGCTCCCTTGACTTCCCAGCAGGGCCAGGACACGGTCCAGAGGGTGGAGAAGAGGGTACTGGACTCCAACCCTGTCATGGAGGCCTTTGGGAACGCCTCTACGTCACGGAACAGCAACAGCAGTCGCTTTGGGAAGTACATCCAGCTGCAGCTCAACAGTTTCCAGGAGCTTGTTGGGGCAGAAATCCAGACATTTCTGTTGGAAAAGACGAGAGTGatgATGGAGGGAGCcacagaggaggagagacagcAGTGGCACATACCACGTGATGCACATTTTGTCTGGCTGCCAAATGCTGACCAAAGACCTGAAGAAGACTGCTTTGCTGTAACCAGAGATGCCATGATGCACCTGGGCATCGACAGTGAGATGCAGAAACACATCTTCCAGATCCTCGCAGGGCTTCTGCAGCTAGGGAGCGTGGATTTCTCCGAAAGCGAAGACGAGTCGAAGCCCTGTGAAGTGCAGGAGCAGTCCAAAGACTTCCTCCAGAAGGCGGGCACCTTGCTGGGGTTGCCCGCGGAGGAGCTGCTGCACTTCTTCACACTCAGAACCATTTGGGTCGCCAGGGAACAGCATGCGCTGCTGAAGCCGTGCTCATGGGCCGAATGCATGGCACGGAGGGACTGCTTGGCCAAGCTGGTCTACGCCCGAGACTTCAGTCTGCTGGATGTCTACGGCTTTGAGAGCTTCCAGGACAATAATCTGGAGCAGGTCTGCATTAACTATGCTAATGAGAGACTCCAGCAGCACTCTGTGCGCCACTTCTTGAAGAACCAGCAGGAGTGCTATCTGAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193131 lncRNA downstream 52384 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 74147 6235183 ~ 6235409 (-) True G153375
TU193125 lncRNA downstream 74698 6234548 ~ 6234858 (-) True G153374
TU193124 lncRNA downstream 75197 6234128 ~ 6234359 (-) True G153373
TU193123 lncRNA downstream 75528 6232166 ~ 6234028 (-) True AMCG00005628
TU193273 lncRNA upstream 243876 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA upstream 245113 6562176 ~ 6563570 (-) False G153487
TU193332 lncRNA upstream 330253 6647316 ~ 6662496 (-) True G153514
TU193418 lncRNA upstream 618367 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 735742 7052805 ~ 7053559 (-) True G153638
AMCG00005642 mRNA downstream 25 6305833 ~ 6309531 (-) True AMCG00005642
AMCG00005638 mRNA downstream 12609 6288469 ~ 6296947 (-) True AMCG00005638
AMCG00005629 mRNA downstream 53799 6247150 ~ 6255757 (-) True AMCG00005629
AMCG00005628 mRNA downstream 75536 6232159 ~ 6234020 (-) False AMCG00005628
AMCG00005598 mRNA downstream 139258 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005639 mRNA upstream 9133 6326196 ~ 6328995 (-) True AMCG00005639
AMCG00005641 mRNA upstream 17224 6334287 ~ 6339833 (-) True AMCG00005641
AMCG00005653 mRNA upstream 73233 6390296 ~ 6398509 (-) True AMCG00005653
AMCG00005652 mRNA upstream 108540 6425603 ~ 6432297 (-) True AMCG00005652
AMCG00005651 mRNA upstream 116651 6433714 ~ 6442366 (-) True AMCG00005651
TU193087 other downstream 226690 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1007358 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2019664 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3218842 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3433547 2875286 ~ 2876009 (-) False AMCG00005491
TU193235 other upstream 173192 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1468491 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1682273 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1774685 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2773359 9090422 ~ 9092573 (-) True G154142

Expression Profile