RNA id: AMCG00005651


Basic Information

Item Value
RNA id AMCG00005651
length 6800
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00005651
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6433714 ~ 6442366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGATGTCTGCGCCCACCACATAACGTGAAAGTGTGGTAAACAAACATGACAGCGCCAATAACCTTGCATTTCTAGTTCATTTAGATCCCAGCAGTACATCTCTTACAACAGTCGTGCAGATTTGGAGAATAATCGCCGAGAATGACTTTACGTTTCTGCAGTCTGCTATTTCAAAGACGGTTTGCTATTTCCACAGTTGTGAATGCGTCACCGTTTCTCAAATCAGGCGGCCTTCAGCGCAGTGATGCCGGCCAGACTCCTCTCCGCGTCCCAGCCCGGTCCTGCGCCACGGAGACGGGGAGTCCTATCGGTGCCAGAGAAAAGGAGGACAGCTTTTGTCTCCCTGTGCCCTCGGTTTCCCCTAATAAAGCTGAACAACAGACTTTGCTGGTCAACTGTCCAGATCAACCAGTGAATCCAAAGGTATTGAAAGTGGCGATCGTCGGAGCCCCTAACGCAGGGAAGTCAACATTATCCAACCAGCTTCTCGGAAGAAAGGTGTTCGCCGTGTCAAAGAAGGTGCACACGACGCGGTCCCGTGCTCAGGGCGTCATCACTGAAGAAGACACGCAGCTGattttgttgGACACTCCCGGACTCACCACTCTTTCAAAAGTGAAGAGGCATCACCTGGAAAAGTCTCTTCTTGTGGATCCTTCCAACACTCTCCAGGAAGCTGATATAGTACTGGTTCTGGTCGATGTTTCGGACCACTGGACCCGTGACAGACTGGCTCTCGAGCTGCTGAAGTGTCTGGGCCTGAATCCCCACATCCCTGCAGTTCTTGTGCTTAACAAGGTGGATTTGTTGAAGAACAAGACCCTTTTGCTGAACCTCACGTCAGAGCTGACCGAAGGGACGGTAAACGGGAGAAAACTCGACATCAGGACTGTTGTGAAGACGCCCAGGGGGAGGAATTACACCCCTCGTAGAGAGCTGGACACAGGGACCTGGGGGGAACCGACAGCCAAGCGTGGCTGGCCGCATTTCCAGGATGTGTTCATGCTGTCCGCCCTGGACGGGGACGAGGTGGAAACGCTCAAGAGATACCTGGTATCGGTGGCCAAACCTGGACCTTGGCTGTACCACAGCGAGGTGCTCACGGATCAGAACCCCGAGGAGATCTGCATTAACATGGTCCGGGGGAAGTTACTGGAGCATCTGCCCCAGGAGGTGCCTTACAACATATCCCAGAACATTGAGATTTGGGAGGAAGGAAAGAACGGGGAGCTACACATCCATCTGGCACTTTATGTGAAGAAAGAAAGCCACATGAAGATGCTGATTGGGCTGGGAGGTCAGACGATCAGCAGGATCGCCCGGGAGGCTGGCGGGGACCTGATGGACGTGTTCTTGTGTGACGTCAACGTGAAGCTTTCTGTCAAACTGAAGAAATGAGGCCCGTGAGGAGGATAGTTTCAGGAACCGCTCGTGCCCCGGCCCGTCCGACACCGCGGTTTCGGAGACCAGCGCACTGTCATCGTTCAACACAGTCTTGCAGCGGCGGTATTGTTTCTACCAGAGCAAGTGTGGGTTTTAATTTGCTCCCACACACCCAAAAGAACAGGCACAGACAGTTGCTCTAAGCAGGATTGCGATCACGGTGTATTACCAAAGTGTGAACGTGGCAGTTTATAGTGTTACCTGATTTTGCATCctgttgttattttcagttgTCACCACTTGGATTATTTACCATGCTAACTATTTTAAGAGAGTTATAAGACCacaaagaagaggaaaaaaactaaatctctAGGCTTAAACGTGAGGAAGTTGAGAAGTAGAAGTTTCTGGGTGCTGCATGTCCTTTAACGCATACCTGCTTTGTTGGATGGGCTTCAGAGGGCTGCGTCTAATGGCAGAGCGGTGTGTGTCATTGCTTTTCCTGGAACAGCCAGAGAACAAACAGACCCTGGCAAGGCAAGAAACGGATTCGTGGGAAAGCGAAAATGATGCAGTTCTCCCCAGAGCACCAGTTTGGGGTTACGTGGAGGTGGCGGGGGTGCGGTGATCAATACTGCGAGTCTGGGAGGGGGAAGGAGGCTCAGTTAGGGAGGCTGGGCTTTATCTGTCCTCCCCCAGCTCTTGAAATCAGCCCCGCAGCAACAGTGGGCCACTAACCTGGCTGTctgcagataaataaattagGAATCCTCCAGTTATGCGCTGTGgcacctcccccctcccccgtctccctctctccgtctctgaGAGCAACGGCTGATAAAGACACCCGGGGCAGAGAACTCAAATCGCCTCCCTAATGGAACCGAACCTGCCGAACAGATGCAATTTGAAACGTTTTTTATTCCCTTCCGCTCTCAGTTTATAGCTGCTCTTTCAAGGGCATCTTGATGAATGAGGGAGGAATTAGTTCTCTAAAGCAAGGCCTTCGGAGCCGCATTTCTGAAACGCTGTTCCACTCCAGGTTGACCAAGTAAACGGTAGCTTGACTTTTCGGGGGCCCAAAATAacaattgattttgtttcagcCTTGTTGAGAGAGATTTCACATCCGAACTTAATTATAAGGCCTCGCTGGCGTTCCCTGGACTCAGTAGCAGTGAAAGGGGTAATTGCAAATATTCACTTGTTTGAAATATTGATTTCCTATTGTGAACGCGAAGACACCTCCCTGGGACAAACATATCGATCTGCGAACCCCCGGAAAGCCAGTCACAATCGggatatttaatgtataatctGTATAGCTGATATTGTAACACTTATTTCCACGTGTAATGATGTGAATGCCTGTTCATTGaagcttattttgttttgctactgttaatttaaaacaaagtggcAGTTGTAGTGGAAGGCGAAACAACAGGACGAGTCACAAGATATTCCTTTCCTGTTTGCATCACCTTGGTGATTTTGCTGCCCTTCAGaaataaaccaacaaagaaaaagacaacactCTGGTGCAAACTTTCACGACTGGATATCTGCATATTGGGGACATTTCTAGATCGACACAAATGAAGAGTGGTACTGAGGGTCTTTTATGTAAAACCTGTGATGCTAAATTCATCTACCATTCCTATATTTTgtagatattaaaaaatactggTATCCCAACAGTTGTGGCTTTTGTAGATTAAGTTATTGTATAGGTTCGTATACGTGCTatctaatacatttatacaatttaacAGTGATGCATCTTAAAGCCCTGAtggtaatattaaaaaaaaaaatgttatgctgtacttttaaaatatatttataaataatcaaaaacaccTTGGAAAAATACACCGGGAACTGATCTTCTGGAAATACCCAGTATTAAAAATGCGCCATCTTCATTTCATAATGGAACTCCTGAGTAtttgagaataaaatgtaaatcgATTGAGAATGAATTATACCAGGCAAAGCTGCGGTGTGAATTGCCCTGCCTCGGAGCGCTTTCTGTGGGATGCTTCATTGGCTGTTTTATGTTCTGTGGCATCTCGCACTGAAAAGGATGCCATTTAAggccttttaatttttttaatccgTTAATCTCGCTTCCAACAGAAGAGGTTTTAATAAGAATTGGATTTTTATTTCGTTCACATTATGCCactttcaacatttaattttaatcttacACTAAAATGTTCCGGAAGATTTGTTAACACATCCTTTTATTAGATGTATACCATTCTGCCTCTTCATGCACATTGCCCTTACACTTCCACACTTCGCAGAtaagactgtgtgtgtattttctccTTCATCACTGTACAGAGCTTGTAAATAATCACCGTGAAAAGATTTggcttaattttttatttatttaaaaacaaacaaggaaaacaacaacacatcatATTTTTACCCGTTTTGTAATCGCACTTCACCAGGTCTTACATTTACAAGTGTTGAGAAGGTGATTAGAGTGGTCTTCTTGACTGAAGCTTTTGAGAAGAGGCAACATAACCCTTACCATTACTAAAGCTCAGTAATGGTAACGGTTTGATCGCCGCTCTCGGTCACCGGGTGTCCATTTCCGTCTGTGTGGGGCCGTTTGGACCGCGTCATGTTGTGGACGAATGAAACCCTGGATAGTACATCATCTATACTGTAGTGTCTCTATAACGAACTTACAGTATATGATGATATCCTGTCCAGAGTACAAGACTCTATGTGAGGGTCTTTCAGCCGCCTTGTTTTAGCCCAGCCTGAAATAAAGCCAAAacacatcaaattaaaacaccTGTAAAGactaattaattgtatttattataattctttCCCTACACATTTGAATAAGGACATGAACCTGTGGGTCTAAGCATGTTTACTGATAGCACCAAgtaatgatcattattatttgcacGAATATCATGCTCATGTGAGAGCATGTTAAACATCAGTCCCTTGCACTTTTACATGGGAGCTGAGAATGCAAAATTAAccactaaacaaaaaaatgaccTCTTTTGTATTATTCCAAATACTATGCATTAGGCGGTTGTTTTTAGTATCTGCAGGCTTGTCCCTTCCaagaaaagggaaatgaaaCTGTTGCAAGCAAAGCAAGAGCCTGAATCACATTTAGGAAACAACAGAAATATTgtaaaagaaggaaaaacttTACAAAGataggtttaaataaatacatttatatgaaatacaaaatataatgggGGCTaagtcataaaatgaaaacctgtCCTGTGTGCCCGGTTTCAGCTCTAAACCACAATTTCAACGATCTGTATCGAATTTGCATTGCACAGTGCATGCTATTCAGCCTGGCTGTCCTACATAACGGCTGTAAACATGCCTTCTAACAGTTAGAAAGCTTCCtaacactgtgacacacacattcAAGCAACcctttgaatttattttattattattattattatcatagcACATCCCCATAGATACCTGTGGATCACAGAGGAAGCCTTTAACTTCTTTGAAAGTTATATTGACTAGTTTAAACACTCACCTTTGTTTCGTGGTCTGCTCTGAAGAAAGTGTTAATTAACAGCTTAATAACACTTTCTTTATTGTCTGCTGGGTGTTCGTGCTGTTCGCGATCCCTTGACAGATTTGCTGGCACCTCCCTGACTCTTATAATGCTGCCGTCTGATTTGCATATTATGTTGAGGTCCGTGCTGGGGGTTTTCCTTCTCAGCCTGTTGCCTGCGTTGGACCAATGACAGTCCTGAACGCTATCAGAGACCAGACACTTTTCAAAACATCACAATCCACCATCCCATCTGGGCTCATGTCGTCAATTCTCTTTAATTCCCCTCTCATTTTAAGAAAAccaatatttgtttattacttTTGATGCAACATTATGTGCAAAGCCAATATCGTTTTTGGTTGTTGCTCTGTAATCACGACAAGGCTTTTAAACTGGTAAAATTGTAATTCTCATGGTGGGCTGCTGTTCTATTATATTCAGGATcaatgttcatatttaattaaatcacacaCTGAGAAATACAAGAGCAGGTGAAAGTAACAGGATTGTGTAATTGACACACAAATGAGTTCCCATCTACCTGCCCTCACACACTCACCATTCATTCGCAAGAGTTTGGGATACTGCAGGTTTCCTGTACTTAGTTAACATACATCTGTAAAACAAACTCACCTCACATTAGCTACCGATATATTTATGGTTTTACACCGAGAGAAGCTACTCAGTCTTGAGCCTCTTTATGAAGACGCcctggaacaaaataaaatgtcccgACCAACTTGGATTTATAACTTTGAGTGAATATGTCAGTGTAATGTTTCTGTGTCTGCTGGAGTAAATTAGTTTAGAGCAAACAGGCCAGATTCACAAAACTCTTCCATGTgtcttaaaacaacaaacacatatttcacCTTGCTCTCATTTGGAGTCATTTTACCAGTAGCCTGATAAGTACTAGAATGAATGGATTTAACCACAATTGGGGATAAATGTGTAaatttgcttttattgtattttgtttcttgaaatatgtatattttgtaaatcccATTGGGTAAGACCATCTGCTAATCagtgaataaataagtaatagtAGAGCTTTATTGTTGTTAGTTGTTGCTGTGgtataaacatgcattttctccattccttcctctctctccctctctctatacatatatataatattctttctttatatttttattttaaatcagtttgcTTTACTCATTCACATATTACACAATATCGGCACAGACGTATTCATACATAATTAAGCACAGATAGGGGAGTTAAAATAAAGTCCAGGCAGCACTATATGTTATTTATTGGACGTGTTTCTTAAAATCGGTCCTAGGGTAGCAATGGGGTGATTCGATCATTTCTACAGTTTGCTGCTCTTCTGTGTTTGCATCTGATGAGTTTTCCTAGCATCAACTGCACCAAATACGAGTGGAGCTTCTCCATTCAATTGCTTTCTGTTCTTCCAATTCAAGGCTATAAGACGTTTTGTGGTCATCAATCTCTTGTAATCAATCTCTTCTGGGATTTATCACAAGCAACTTCCTCTAAATAATTAACAGGCCTATCTTGGGGTCCAGTGGTACCTCACACCCGTGGTTTTGGATAAAGTATCTATGTCCATGGTCCAGTATCCCACCAGCTTTGGGCAGTGTCATATCATATGAATAAATAACCCTTTGCCAACTCATGTCAGACTCGCTAGTCTTCCTTGGTTTGGGTTTTTTTGGTGTAGTGTAAACTGCGTACGAAcgtataatttatttctcacagAACTGGAGATTTAATGCATAACTCTCCGTGTCACTCACACTTCAGGACTCCACTGTCCACAT

Function

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03595 era, ERAL1; GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193131 lncRNA downstream 176542 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 198305 6235183 ~ 6235409 (-) True G153375
TU193125 lncRNA downstream 198856 6234548 ~ 6234858 (-) True G153374
TU193124 lncRNA downstream 199355 6234128 ~ 6234359 (-) True G153373
TU193123 lncRNA downstream 199686 6232166 ~ 6234028 (-) True AMCG00005628
TU193273 lncRNA upstream 118573 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA upstream 119810 6562176 ~ 6563570 (-) False G153487
TU193332 lncRNA upstream 204950 6647316 ~ 6662496 (-) True G153514
TU193418 lncRNA upstream 493064 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 610439 7052805 ~ 7053559 (-) True G153638
AMCG00005652 mRNA downstream 1417 6425603 ~ 6432297 (-) True AMCG00005652
AMCG00005653 mRNA downstream 35205 6390296 ~ 6398509 (-) True AMCG00005653
AMCG00005641 mRNA downstream 93881 6334287 ~ 6339833 (-) True AMCG00005641
AMCG00005639 mRNA downstream 104719 6326196 ~ 6328995 (-) True AMCG00005639
AMCG00005640 mRNA downstream 116651 6309556 ~ 6317063 (-) True AMCG00005640
AMCG00005673 mRNA upstream 38700 6481066 ~ 6486250 (-) True AMCG00005673
AMCG00005674 mRNA upstream 48542 6490908 ~ 6491315 (-) False AMCG00005674
AMCG00005675 mRNA upstream 54994 6497360 ~ 6497661 (-) True AMCG00005675
AMCG00005671 mRNA upstream 60087 6502453 ~ 6527620 (-) True AMCG00005671
AMCG00005672 mRNA upstream 86201 6528567 ~ 6545880 (-) True AMCG00005672
TU193087 other downstream 350848 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1131516 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2143822 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3343000 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3557705 2875286 ~ 2876009 (-) False AMCG00005491
TU193235 other upstream 47889 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1343188 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1556970 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1649382 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2648056 9090422 ~ 9092573 (-) True G154142

Expression Profile