RNA id: AMCG00005654


Basic Information

Item Value
RNA id AMCG00005654
length 951
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00005654
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6787860 ~ 6800839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGATGTCCTGGTGGCCGACTGCAATTTAAACTCGGTGTCTGAACGTTTAGAGCATTGCTGTCTGGAGAACAGCATCGAGGAGCCTCCTTCCAAGAGACACTCCAACACCGGGGCCAAGCTGTGGGGTCGTGTCCGAAGCAAGCTGCTCAGACAAAAGCTGGACCCCCAGACGGTGCAGTCCAAGAACTGGCACATGGATGTAATAGAGATGAACGGGATCAAAGTGGAGTTCTCCATGAAGTTCACGACTCGGGATTTGAGTTTGAAGAGAACGCCGTCTAAGAAGCAGAGCGGGGTGTTCGGGGTCAAGATCAGCGTGGTCACGAAGCGGGAGCGCTCCAAGGTGCCTTACATCGTCCGCCAGTGCATTGAGGAGGTAGAGAAGAGGGGGATCGAGGAGGTGGGGATATATCGCATCTCCGGTGTGGCGACGGACATCCAGGCCCTGAAGGCGGCGTTTGACACGAATACCAAAGACATCCTGGTGATGCTGAGCGACATGGACATCAACGCCATAGCAGGGACCCTGAAGCTGTACTTCCGAGAGCTGCCGGAGCCCCTCCTCACCGACCGGCTGTACCTTGCCTTCATGGAAGGAATAGCTCTCTCAGACCCGGCTGCCAAGGAGAACTGCATGATGCACCTCCTGCGGTCGCTCCCTGACCCCAACCTCATCACGTTCCTCTCCCTGCTTGAGCACCTGAAGAGAGTCGCAGAGAAGGAGCCCATCAACAAGATGTCCCTCCACAACCTCGCCACGGTCTTCGGCCCCACACTGCTCCGGCCCTCGGAGGTAGAGagcaaagcacacatcagcctGGCATCGGACATCTGGTCACATGACGTCATGGCGCAGGTCCAAGTCCTGCTCTACTACCTGCAGCACCCCCCCATCTCCATCACCGAgctgaagcgcaacaccctgTACTTCTCCACCGACGTGTAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20643 RGD1; Rho GTPase-activating protein RGD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193332 lncRNA downstream 125364 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 224290 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 224290 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 530688 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 552451 6235183 ~ 6235409 (-) True G153375
TU193418 lncRNA upstream 134591 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 251966 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 338341 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 378789 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 477665 7278504 ~ 7278765 (-) True G153681
AMCG00005645 mRNA downstream 44639 6722947 ~ 6743221 (-) True AMCG00005645
AMCG00005646 mRNA downstream 75874 6706658 ~ 6711986 (-) True AMCG00005646
AMCG00005644 mRNA downstream 83500 6690451 ~ 6704360 (-) True AMCG00005644
AMCG00005664 mRNA downstream 192966 6582699 ~ 6594894 (-) True AMCG00005664
AMCG00005665 mRNA downstream 212229 6571057 ~ 6575631 (-) True AMCG00005665
AMCG00005655 mRNA upstream 25090 6825929 ~ 6872866 (-) True AMCG00005655
AMCG00005632 mRNA upstream 108479 6909318 ~ 6920861 (-) True AMCG00005632
AMCG00005631 mRNA upstream 123210 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005633 mRNA upstream 138973 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005678 mRNA upstream 215709 7016548 ~ 7016940 (-) True AMCG00005678
TU193235 other downstream 291289 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 704994 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1485662 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2497968 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3697146 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 984715 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1198497 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1290909 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2289583 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2624451 9425290 ~ 9434940 (-) True G154250

Expression Profile