RNA id: AMCG00005664


Basic Information

Item Value
RNA id AMCG00005664
length 9502
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00005664
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6582699 ~ 6594894 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTTTGTTACGGCCAGCGAAGCATGTTGTCATTTGCGCTGGCTGTAATTTTGTACTGCGTCTGGATTAAAGTACTATATAACCAGCAGCGACTGCTCACGACGAGGACTGGAAAGGCGCGTTTATTGGCACTGATCGGGCGAGGCTGCGCTTCTCGGAGCAAAAGCACGCATGGTCCGCATCCGTGTCCGTCCGACGAGCAGCCCGCTGCGGACGGCATCCGGGCCCTGCTGGTCACCGCGCACCCCGACGACGAGTGCATGTTCTTCGCACCCACCGTCCTACAGCTGCTGGAGATCAACGCTGCCGTGCATCTGTTATGCTTGTCGTCAGgaaATTACTATGGCCAAGGGGAACTGCGAAAGAAGGAACTCCTTCAGAGCTGTGAGGTCCTGGGAATCCCAGCCGTTCACGTCACTGTCGTTGACCACAGGTGAGGGAGTCACTGGCCCACGTAGCAGggctattattttaaaagtatatatttttaaatggagcTAAATTTTGTAATCAGCAAATACTGGCCAACTCAACTTACCGTTTAAACCTCATACCATGACAGGGGTGAAGACAACATACATATATCCTACAACGCAAGTACAGTCAGGCCACTGGCAAGTAAACAGCAGAGCTAAAGACATCACTGAGCTAGCTATACACAGCTGGACTCTGCAAACTGAGTGGGAAAGACTGGGAATCACTCAGGATATGCTGGCTCAGTTTTGTGTCATTCTCTGGGGAATCGTCTAAAAAGTCAACTACTAATAGGCCAAGTTTAATAAAACCAGGGAAATCTGGAACAGATATGGCACAACCTGTACTCTTAGTGGAGGCCTTTGTTGGTGGGACCTCAATTGGTATTTCCCAGTGTGGGAAACTATTCCAACAATGCTAAGATGAAAGACAGTCTATTGTGGATGACGGTAGAGATATAACATCAAAGTGGACTTTGCGTTGTGTCATGCCTGAGGAGGTGGTTTGTTCAGAGGAATTTattactgtatatgtaaataaaatcacaggtCTGCACAAGCATCTTTCAGGCAGTCGAGCTGCCAAGGTCTATACGGATCATTACTAAGCCAACCTGGCATGAAAGATGCATAGGGGTAAACACTTCTATTACTCACTAGTGAGGTGTAGGACTGAGGCTGTGACAGAGCGTGCATGTTACAGCAGGATCCCCTTTTCTCGACATGAAAGATCTGCCCCCTGAATATACAACACAGAGACACGGCTCACCGAAGTGATGCCTATTAATTTGGGCTGTGTGTCTTTATTAAAGGTGAGCCAGATTTAGGTAGGCAATATTCAGACGTGTATGTTTAATCCAGAAGGGATTAAAGATCCGTCAGTTGTAATTCTGCGTGGCTGTCTGATTCGCCGAAGAGCTGAGATTGTTGTGAAACAAAACCCATGAACTGAAATGATCTTTCCTAGCAGGAAAGTGCAGCCCGTTCTTCCCAGAATGACCCGGTGATGCAAGTGTTTCCCAAGTTCACCGAGTTTGTAAGAAAGCTAAAGGCtacaataaaatgcttttacGGCATCATTACTAGTTTTCCTAAGAAGTGCAATGACCGTCAGCTGTTTTTCTCAGTAAACACTTTGCGGCATTTTGGCAGGAATCTGCACGGCCCCACCATATTAGAATGAGCAGTCGGGTAGTTACATCTATGTTGGTAACCATTTTtgtgttgtgattttttttactgaaaccCGTACCAAAATGTGCTGCTACTTTTATCACTTTATGTTCAAGCAAAATTGACTAAATTACTCTTAAAAATGCTCTACACACAACCTGGATGTCACTGTAAGACCATTTCTAACTTCATCCGTTTGCCTAATTGAACTTACCGCTGccacatatttaaacattgtttaaacatcCAAATGATACAGTACAGATTTCAAACAGGGGTACCAATTAATCATCCTAACACCGGCATCATATTCAGACTCTTTGTTCTGACCTGTGGTGGTGGGCTCAGCTAAGGCTGTTTTCAGCTGCAGCACGAGAGACGCACTGACTTGTGTTCAGTTAGTTACTCAAATATGGGTGTTGACAGTGAGCCTTGGTGTGAAGACCCGGCCCACCAGGCAGGGCACCGTGAACAAATGGCCAcagacgcgcacacacacatggccTGCAGCCCTGAACCCTGAGTGGACTCCCATTAAGAGGCACCAATCCGAGTCGAACCCCTCCCCCCGGGCTGGGGTCTTCAGAGTGAACCAGTAGGTGGTCACAAATCACCCGGCGCTCATTCATACCAGAGTGGCCATGGCAGCCTGATGTATTGGGTGTCTCTGTCACTGAGGGCCTTAAAGAATTGGATCACAAAGCCAAGGAGGCATTGAAGGAGCTCTTTCCAGCACTTGCTCGCCAACCTGCAGACCCTGTAGATGAGCAAAACATGCTCCTCACACGCTGAAACCCCAAGCATTCATTCACCGTTAATTAAAGTTACAAATCAAGCCTGCAACAGCTAATGTAGGCATAactgcattaataataacattattattctgATTACTGTAACTCTGCCCCACTGTGACATCACTCCCACATCACCGGGCCGCATTTTCCCTGTCCTGACCGGTTTCCATTCACTCCATTCATCCTCCAGTTTGTATTCTTGTGCTCTGCTTCTGCAggaagaaaccaaaaacaaatatagcTCTACCAAGAGCTCAGAAGGTCAGTGTGCCAGGCTAGGGCTATACAGATCAAAAGGCCAATCTGCCCCCTGAATGGCCTGAGGTTTTAATAAATACTCTGCCGAGCCATGCTGAGCACGgacctgccccccccacccccaggtcTATTCATCAGCTAGACAGCCCTCCCAGTCTTGAACAAAGGGGAGCAGGGCCCTGTGGGCTGGAGCTGGTGATGGAATAAGAACATATAAGAACTGGATGGGATGAACTTCAGACAGGGGTCCATTACGGCCCAGCCCTGATCCTGGCTTCGGCACAGTCTGTCTGGCTGTGTTTAACTCTCAGTGGCTTCACAGTGTCTCCCATCAGGGCCTATACTTTTCAATTCGGTGATGTTTGAAAAATCACCTAGAGTTCATTTAGGATCAGAAACCGTAATCAATAGTCATACAAATTCTGTTATGATTCCCAAGTCCAAAAACCAAAATCAATCAATGCTATCCAAACCAATATATTGAAACATGGCCATAGAGCAATAGCAGGAGAGGACGGTATGGGTTGGGGTTGGGGATGGGGAGTGGTGTTGCCTCATTTCTATAAAGTAGGGCATCCTTCTTGTCTTATCAGCCTAGACATATGAATCCAGTGATGAAGCCCAATGACATACTCCGTTGTTGGCCGTTGCGAAATGAACGTCCTGGAGGGTGTACATTAGTTTGGATTGTGAAGTAATAATTACCCCACAAAGGCACTCATGAATGATTCAGTGGCCTCACTGTGACGCTGGCCAAAAGACCGGCAGGGTAAATGAGTTTCCACAGAAAGATTATTCCTTGTTTTCACCCAAGCCACATTTGCCCTCTGGGAGGAACCTGACAAGAAAAACGGCCAAGGATAGGTGAAAACATGTCTGTGTCGAGCATTGTTTAGATTTTGTATTACATAATTTCTATCCACATCTGAATTGTGTAGTATTTCAGATTAAAGTGGAAGTTTCagcacactgtacaacacaaaatacataaacaatgaaGGTTGCTAAACTTTATCTGAACTCAAGGCTGAAATCTAAGAAAATATTGTagcttgatattttttgcataagTACCAGTGCCGCCGATGGGTTCGACTGATGACACTGATTAAAAACGAAACGATGCATCATAAAATATGACAACCATCTGGGCAATATGTGGATACTCTCACAAATCCTGTCTCTTCTTtagatttaatattaatattagaatGAATGTGACTGCCGAGTGATCAGTGACAGCACTGATGATGAGgactatgcatttgtattttccatttaaatcaaGAGTTTGAGAATAACAGTAGGCCGAGCCCTGAACCCTAAACATAATCCTAGTGAAAATTGTAGCTTAAATAGCCAATCACCACTATAACCAACCTCTAGCCTTAAATGCAGTCCACACGTTCAACCTAAATCAAACCCACAGATATCCACTCACTTTGTTTCCTGTCCTGAATAAACATAGGAATTTGGTCTCTTTAGATTTTGCGAAGCAACTACATGTCAAATCCCACATAATGTTCTGGGGAAAAGGCACAGTTTAAAGAGCACATCGTTCTATGTCGCTAGGATACTTACCCCTCTGCTGTGGTTCACTGGCCAAACCGCTGTGTCGAGAAGGTCTAATTTCTGAATACATGTTTTGCAAAGAATGTCAACGGCAGCCAAGTTCGGGGTCATCCAAAACGCCAAAATAGCTGACTTTCAGAGTATCGCATTCCTTTCAATATTGCGTCTTGTTGTCCACTAAGCCTGCAAAAACACAGCCACTTGGACAGTGTAAACCTGACGAGGACAGAGACAGGCCAGGGACGTTAATGTCTGTTaagcatgtgtttttcatttggtaATTCAAGTACCCACGCTCTGATGccgaataaacaaataaaccacagATAAAGAGGTACACTTTTATTCCCTCCATGTTACTGAAAAGATATTTCCTTTGACCCCATTAGTGTCTTGTGGGTCTGTGACCCTGCTTTGTCATGGTTTACGCATcccataataaatacaaataaatgattgtgtGTACTCCattgtactgtgtgttttgcatgtttatcTCCCTTGGCTGTTTCCACCTGGGCATGTATTCTTTATCAGTGATTTCTTCTAACAAAACCATTTGTTTTGAGTTGTAAAATGATACTAAAAGAAATTACTCCAGGTTCAACGCTCCCATATTTTCCGGGGATGAAAGCTATTTAACTAGCTAGAGCAGGTTGAGAAATGAACCCTGGAACGTGAGTCCTGCCCAGAATGAAATCAGTCTTCAATCCTGTTATCAAATGGCCCTGTTCTGACACTTTTGTGAGCAGTtgctggaggagggagagagggggtcTAGACTTCACTTTAACACTTGTTTGCCCTCCTAAGTTTATTCCTCAAGGtcagtatacatttaaaactaaagaaaacaaacaataatatcaCTGTTTAGATTAGGTCTTAATTTCGGGAAGACAAAAACGCTAAAACATGAAAACcccaataaaaacacaagaatgaCAATTTAATGCAAATAAAGAGGAACCAAAGTTAAGATTTAGAAATAGAGAGCACCGGTAATTCCTCCGATGGGGTTTATCGTTCTCCCTGCGTGTCCGACCTTTGCCTCGGTCAGCCCCAGTGGCTGTACTTGGAAGAGTCCTTGTGCTTCTGAGAATGCAGGTGCTGTCTGCATGTGAGATTACACATGGTGGCCTGCCAAGACTGGTATTTGAACTTAACCATTGACCTGGAGCTTTCCATAATAAGCTGGCCGACTTCCCAGAACCTGCAGTCCTACGGTACGTTGCTGCTGCAGTCGTCGTTTCTCTCTcatactctctctcactcgATTTATTGTCTCTTTTTACAGTGAGATATTGTTGAACTTTGATCCACGTCGGTCTACTTGGTATCTTTCCTGGCCCTCTCCATCCTGAAAAGCAATACTCCATTCTCCAGTGCCTGTGCTACTGCATGCATGTGCTTTTTTGCATTGAACTCTGTCTCTCAGACTCCCCTCATCAGATGGTGGTGTTCAAAACTGCGGCCCAGTTTCACAGATGTTGCTATGTAGGTCAAAGTGACctgctgtttgtctgtttacaGCAGCCACACCAAACTGAGTGTTTGGCTTTTGTGGTGTTTTGCATCAGAGCAAGGCCAAGATCTAGAGTCCCACCAAGACTTTAACTGACAGGTTGACAGAGCCTGACATCAGTCACCGGGGGAGCTCTGACCCAAACCCTGGACACACTGAACATCTTGACATGCAGTTGCATACACGACTGCCTCTCTGTCACTGACAGTGCTCGGCTGAAGTGAATGTCCTTTGAAGCAGTAGCCCTGTGTGTGCCTGCAGGAGTGATGCTAATTCTGGATCAATGCAGTCGTCCCGCAGCTGGGCCTGGCTCTGCAGGGGAGCACTGGAGGTGACCAGGGGATTAGTAATAGGAATCCTCCGGGCCACGATCACCGTCATTAAAAACCAGGGCCCAGCCTCTCTGTCATGTTGTGTTATCCTGCTGCCATTGTGTCGAGTGCCATGACGGCCGGTGGAATGATCCACTACACACCGTCGATGGAGCACAGTGGATATTGTTGGATTGTTTTAAACGTGATGTTTATATCGGACAGACAGGTTAGATCTAATGTTGAGCGACCATTATTATATAGTAAAAAATGCCTGGTTAGGTCCAAAATACTGCCGTTTCCTGCACAATAATGCATATTAGGCTCTCACAGTGGGGTACTGCACTAAGCTACGTGCTTATTCCATCACAGACGCTTTCCCATAGGAGTTCAGATGTGCTGATCCATATGGTGGGAGGGGCTGGAAGTCCTGACCAACGAGTCGCCTTTGGCTGATGATAAAGCACATTCAGGAGATTGCGTCATCGAAGAAGACTCGTTTTAAGGGTGTCTGTTTAAATATAACTCAGACCCTCTAATCCAGTCATTGCAATCATACAGGTCTttgatgtaaaataataatgagcgATTGGCCAGTCTTTAAGGGGATGTTCTTCTATAGTCCTCAACCCTCATCTTAAAAGAAACTGTGGCAGCgcctcccccacccccgctTGGTCTTAGGATCCAGTGTCAGGCTGACTGGAGGGGCTTAGTGCTTAATGACCAGGACAGCCGTGTTGAGTCTCTCAGGCCCAAAGCTTTGTGGGTCCTTTGTAATCAGCCCAGATCTGCCCTTGTTCCAGTGCTTCTGTGCTGCCCCCACACGCCCCCGGGCTACGCTGAGCCATAAAGGGAGTCGAGGACTTCAGGGACCCAGCAGTCAATCGGGACCCGTGGAAGACTCTCGGCTGAGCAGCGGACACCAAATCGGCTTTCCCTTCACTTGCCCATTCATTTTAggtggtgttttttatttacatctgCGTGAAGTACATTTCACTGGATTACCATTCTGTGAGTCTGCTGTATGGGCAGATGTCGTGGGgatgctgtttttattattcactcTTTCTGTGAAACTGACAAACATCAGGAAAATGTAACGACAGTAACAGTGTGttgaatttgaaatgatcaaataaacaaatatatgtggAAAGTGTGACATACGATGGGGTATGAAGTGGGGTTTGAACACTGATTCCTATAATCTGAACATATTCATTGAGGGGTTCCACATACGTACTTCCCTGCCCTCTTTATTCTTGTCAGGCTGCCAACAACGAGTCCCTGATTTTACACAGGATGTTGATTAAGCAGAAACTGCGCCAGATCATTGCTTGAGAAAGGTCATGAGATCATACACTTATGTGACAAACTAAAGTCTCATTGACAAAACCAAACCatcttaaatattaaaatgtgtggaGTATCTGAAGTGTATCTGTTCAGTTTTCATAAGGTATGGGCCAGTTTGTCAGAAAGATTATTCAAAAGCACTATaaactgtgtctctctctcggAGAAAGACAGTAagtggttttaaatgttatattttgtttcacctCTGCACAGAGGTAATCCACAATGCAGAGAAGCTGTCAGTGTTTGCCTGATATTTTATTCCCACTCCTTGTCAGCAGCCtctatttaattataaattgattGCCACATACAGCACTGCAACCTTTCTGTACTGAGAGTAATGGACAAAGAATTGCTCTGAGATTTGCCAGGCCTGGTACTGTTCCTGTATTGGGTCTGGACTGAGCATGAGCCCTTTACCTTAATCGGGGGAAACCCCTTCGAATGGAGGCCTTAGCAAGCCATTGACATGCCCTGTCTGACACTCGGCTGAAGTGGGAATTTAGAAGTGCCTTAGGAAGCACTGTTTTCTACAAGTTTACCCTTTACAACCTCACAGACATTCACATGTAATATCCAGCCTGATTTCTTACATGATAATCGGTATTCAGACAAAGCAGGTGTCCTCGACTGGATCAGACACAGGCAACAGCTGTGCAAGCTTTTACGGTTCAGTTGAGAGGCAGTGAAAGGCTGGAAGTTAAACTTCAGAAACGTACCACTTGCGCAGACAGGATATTGAAAAGCTCACAGAGGAGTTAAAgtctgtgtgtactgtgtgtacaGGATGGAAGCTCATTTGTTAGCTTGTAGTTCCTGGCCCATGTGATCAGACTGTCAATCAAAACAGGCGGCTTTGCTAGTAGGCCAAAGTTCAACAACTGCATTCAGATGCTTGTGGGCAATTAGAGATCTACATGCAAAGCAGCAAAAGACAGGGGTTACTCTAGGCCGACACACTGTTGCTATAGCAAAGCCAGCACACCGCATGTCAATTAAGCCGATACTCTGCCAGCGTATTGCATGAGAAAGGTCATGTAGATCAGCCATGTATATTGTGagcatttttcctttcttttcctttcacCTGAGGTCCAGTAATAGCCGAGTTAAGAGCTGAGCTACACTGTAACGTCCCACCAGTTAAAATTACTTTAGGAGTTTGGACAACCCCAGCAGACGTACGTAGAAGGTAGATTGAGTTTATTCTGGCTGAGGCTCGCTTGACTAAGGGACAGTGACCCGGCCACGAGGACGAGGCCATGGGATCCCTCCCACCAGGTGGAATGAGCCGAGGAACTGCAGCAAAGGCTGTGTTTCGTGTGGGGGAGGGAGGCCAAGCGACAGATGCTGGAAAAGTGTGTTCGTTGACAGATACTTCTGCTTGGAAAAGGCAGAAGTCAGGCGTGAGATTGGGTCTATCTTCCTCCCAAATTTACTGCAGATTATGGTTGTGTGTGGACAACACTACTACCTGGGAGCTTGTACATGAAATTAATATGATGCGATTGTAATCCGAAGTAACCttattattgtactgtattgtccGATGGAAACAACTGTTAAAGGTCATTTGATTTGGACTGAGTTTAAGTGGTGGAATACAGGGTAATTTCTGCGCTTGTTTAACATGGTATCTACAGCAGAATCGTCTCCgtctgtaattaaaaacattaaattgcttCAGTCCCTAAGAGTTTGTCACGGGGCAGACAGGCAATGTAATTACTGCATTAGAGCAATTTCGCTTTAGTAGACATGCACTACAGAAGGCCGATTTTGAGGGTGAATTAGGCAAGCTGGGCAATACAGGTCTTTAAACGTCAGCctagaaatgtgtttgtgtgtgacacTAACTATCACAGTGAGGAGTGGCCCCTGGTGTGACAATGCACACGATGACTAATTATAGAGATACTGTACTAATTATAGACGCCTACCACACAGAATGATGCACACAATATTTTGGCTTTGTAAAATGATCTAGCACGGGAGTTGACGATTCTGCTACTTTTCTGGAGGGg

Function

GO: NA

KEGG:

id description
K03434 PIGL; N-acetylglucosaminylphosphatidylinositol deacetylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193273 lncRNA downstream 19129 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 19129 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 325527 6240402 ~ 6257172 (-) True G153379
TU193126 lncRNA downstream 347290 6235183 ~ 6235409 (-) True G153375
TU193125 lncRNA downstream 347841 6234548 ~ 6234858 (-) True G153374
TU193332 lncRNA upstream 52422 6647316 ~ 6662496 (-) True G153514
TU193418 lncRNA upstream 340536 6935430 ~ 6935676 (-) True G153586
TU193473 lncRNA upstream 457911 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 544286 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 584734 7179628 ~ 7202286 (-) True G153678
AMCG00005665 mRNA downstream 7068 6571057 ~ 6575631 (-) True AMCG00005665
AMCG00005672 mRNA downstream 36819 6528567 ~ 6545880 (-) True AMCG00005672
AMCG00005671 mRNA downstream 55079 6502453 ~ 6527620 (-) True AMCG00005671
AMCG00005675 mRNA downstream 85038 6497360 ~ 6497661 (-) True AMCG00005675
AMCG00005674 mRNA downstream 91384 6490908 ~ 6491315 (-) False AMCG00005674
AMCG00005644 mRNA upstream 95557 6690451 ~ 6704360 (-) True AMCG00005644
AMCG00005646 mRNA upstream 111764 6706658 ~ 6711986 (-) True AMCG00005646
AMCG00005645 mRNA upstream 128053 6722947 ~ 6743221 (-) True AMCG00005645
AMCG00005654 mRNA upstream 192966 6787860 ~ 6800839 (-) True AMCG00005654
AMCG00005655 mRNA upstream 231035 6825929 ~ 6872866 (-) True AMCG00005655
TU193235 other downstream 86128 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 499833 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1280501 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2292807 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3491985 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 1190660 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1404442 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1496854 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2495528 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2830396 9425290 ~ 9434940 (-) True G154250

Expression Profile