RNA id: AMCG00005668


Basic Information

Item Value
RNA id AMCG00005668
length 1644
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00005668
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6551704 ~ 6560667 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCAAACTGCACGACTCCGCATTGGATAATAAGAGCAAGAAACATCATTGAAGACTCGCAGGAGTGGAAGGCATTCACTGCAGAGCTGTTCGAGGCCGTGCAACAGCAGCTGACAGAGAGCCACGTCAGCTTGTTCACCGACCTCTCGGAGGCTGAGAAAACACTGTTTCTTGAGAGAGCGGCAAAAGCAGTTCACAGAGgCACCGCCTACAAGGATATCATCATTCACATTAGCTCCACCCTTGATTATATGCTGAGCAGTTATGTGGCAAAAGAGACAAATGACTGTGGCCCCATATGCACTAAATCAGACCTCTTCCAGACTCACGTCAGAGATGGGATGGTCAGTCTTTTACTAAAGTGGCCGGACATGAAGAGCAAACTGCATGCTCTTTTCAACCATCCCTTACCCTCGGAGGTCAGAAAGGTGGCCTGGAGGCTGTTTCTCTCTAACACGAAGGCTCAGATGGATTACCTGTCACTCATGTCAGTGAACAAAGCCAAGTCTCGGTCTGACTTGGATATCAGCCAGCAGTGTCAGACCCTGCTGTCCAAACAGCCCACCTTCAAGAGTCTGCAGGACAGCGCTCTTGCAGGAAAAGTCATGAAAAACACGCTCTCCTATTACCACAGATATCGGCGTTTTAAGACGGCTCTTCCAGACTCCGAGTCCTTGCTGCTGATCCCGCTGACGCAGGCTGCTGTGGCCGGCTCCACGCCCAGCACCTCAGTGGACTCTATCACCGCCCTGCTGGTGGAAGAATATATCACCTTTATGGACTCCAGGTTGGCATTCATGAGACCTCAGAGCACGGGGGTAGGTTTCTTAAACATGACAACACTGCTGTATATCTGGGATCAGTACATCATTGGACTGGACAGGCCTTCATACAACTGTATTCCTGCTTTTTCCTGTGCTTTCATGCTGCTGCTGAGAGATCGTCTCCTGGCTTGTGGCACGCAAGCTGAGCTGGCGGAGGTCACTCGGGGTCAGGGCCCTGCACTGGCTGTGCGGCAGTTCCAGAACGTCATCAGTAAATATTTCTACGGAGAGCTGTACAGCCAATTAACAAAAGATGAAGCCGAGAGCTTTCCTACTCTGGATCCAACACAAGCCTTTTTCCCCCCTTGGACTCATTTGTCAACCAACGATGTGCCTTTGAGGACACGGCCTCAAGACAGGAGACTGGCAAGAGAAGAACGGGAGGTTCTGAGGGCCAAGCAGACTGAAAGACTGAAGCAGGAACAACAACTGCAGAAGctcagagaagaggaggagatcAGACGAGAGGAGGAGAGACTGCAGAGGCAACTAGAAGAGACTCAGCGCATCAGTAACGAGCAGCGCTTTCTCCTGGAGGAACAGCTGGCTCAGGAAAGGCAGCATCGCTATGAAATCCAGAGGAAAGCAGAGGAGCAAGTTAAGCTGCTTCAGGCTGAAATCGCAAAGATCAAGGAGAAACAGTTGGAAGTGTGTGGTCGCTACCTGGATGCTGAGGAAATGGATCTAATGAAGGAGCCCCTTAAATCTCACCTGAAGAGCAGACTTGCTGCCGCTACGAGAAGACGAGTGGAGGCTCGGTACAGAGCCCAGCTTGGGCAGGGGAGGAGACCGCGGTCACCGGCCATGGGGTTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193199 lncRNA upstream 114965 6435464 ~ 6436739 (+) False AMCG00005647
TU193146 lncRNA upstream 157976 6333252 ~ 6393728 (+) True G153390
TU193133 lncRNA upstream 220333 6282988 ~ 6331371 (+) True G153381
TU193099 lncRNA upstream 317657 6232159 ~ 6234047 (+) True G153348
TU193057 lncRNA upstream 503266 6048130 ~ 6048438 (+) True G153312
TU193268 lncRNA downstream 232 6560899 ~ 6563478 (+) True G153485
TU193312 lncRNA downstream 47976 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA downstream 47976 6608643 ~ 6662480 (+) False AMCG00005663
TU193304 lncRNA downstream 53784 6614451 ~ 6662480 (+) False AMCG00005663
TU193461 lncRNA downstream 541538 7102205 ~ 7157875 (+) True G153626
AMCG00005670 mRNA upstream 24160 6520852 ~ 6527544 (+) True AMCG00005670
AMCG00005666 mRNA upstream 43087 6508285 ~ 6508617 (+) True AMCG00005666
AMCG00005667 mRNA upstream 62922 6487911 ~ 6488782 (+) False AMCG00005667
AMCG00005648 mRNA upstream 74881 6467610 ~ 6476823 (+) True AMCG00005648
AMCG00005647 mRNA upstream 114626 6434521 ~ 6437078 (+) True AMCG00005647
AMCG00005669 mRNA downstream 7420 6568087 ~ 6570099 (+) True AMCG00005669
AMCG00005661 mRNA downstream 42318 6602985 ~ 6618586 (+) True AMCG00005661
AMCG00005663 mRNA downstream 67350 6628017 ~ 6661197 (+) True AMCG00005663
AMCG00005662 mRNA downstream 103512 6664179 ~ 6669390 (+) True AMCG00005662
AMCG00005643 mRNA downstream 223495 6784162 ~ 6785859 (+) True AMCG00005643
TU193227 other upstream 63084 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 1329789 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1990220 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2266741 4283060 ~ 4284963 (+) False AMCG00005538
TU192255 other upstream 3280865 3266742 ~ 3270839 (+) False AMCG00005498
TU193523 other downstream 700010 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1655223 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1943528 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2875233 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 3027135 9587802 ~ 9589798 (+) True G154283

Expression Profile