RNA id: AMCG00005669


Basic Information

Item Value
RNA id AMCG00005669
length 435
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00005669
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6568087 ~ 6570099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GtgtatttgtacttttaaaacctacatatatatatatatatatattttttttttttctgtaaacttAGCATTATGGCCAACGCTACAGTCTCCGGAAAGCTACACAGTTGCAGTATCTGCACCAAGAAGCAGAACCGCCATTTCATTGTCCCGGCCTCCCAGTTTAAACTTCTACAGGGAGTAGACAATTTAACCACATACACTTTCAATACCCACAATGCCAAGCACACATTCTGCAAGACTTGTGGTGTGCAGAGCTTCTACTGTCCTCGATCCAACCCTGACGGATTCGGTGTGGCGCCGCACTGCCTGGACCCGGGGACAGTGCGCAGTGTCACAGTGGAGGACTTCAACGGGGAGAAGTGGGAGGAGAGCATGGAGTCACACCAGACCATCAAGAGCATGTCGAAACCCACTGCTGGAACGGAGGGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193268 lncRNA upstream 4609 6560899 ~ 6563478 (+) True G153485
TU193199 lncRNA upstream 131348 6435464 ~ 6436739 (+) False AMCG00005647
TU193146 lncRNA upstream 174359 6333252 ~ 6393728 (+) True G153390
TU193133 lncRNA upstream 236716 6282988 ~ 6331371 (+) True G153381
TU193099 lncRNA upstream 334040 6232159 ~ 6234047 (+) True G153348
TU193312 lncRNA downstream 38544 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA downstream 38544 6608643 ~ 6662480 (+) False AMCG00005663
TU193304 lncRNA downstream 44352 6614451 ~ 6662480 (+) False AMCG00005663
TU193461 lncRNA downstream 532106 7102205 ~ 7157875 (+) True G153626
TU193551 lncRNA downstream 727035 7297134 ~ 7297381 (+) True G153687
AMCG00005668 mRNA upstream 7420 6551704 ~ 6560667 (+) True AMCG00005668
AMCG00005670 mRNA upstream 40543 6520852 ~ 6527544 (+) True AMCG00005670
AMCG00005666 mRNA upstream 59470 6508285 ~ 6508617 (+) True AMCG00005666
AMCG00005667 mRNA upstream 79305 6487911 ~ 6488782 (+) False AMCG00005667
AMCG00005648 mRNA upstream 91264 6467610 ~ 6476823 (+) True AMCG00005648
AMCG00005661 mRNA downstream 32886 6602985 ~ 6618586 (+) True AMCG00005661
AMCG00005663 mRNA downstream 57918 6628017 ~ 6661197 (+) True AMCG00005663
AMCG00005662 mRNA downstream 94080 6664179 ~ 6669390 (+) True AMCG00005662
AMCG00005643 mRNA downstream 214063 6784162 ~ 6785859 (+) True AMCG00005643
AMCG00005630 mRNA downstream 363155 6933254 ~ 6936834 (+) True AMCG00005630
TU193227 other upstream 79467 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 1346172 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 2006603 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2283124 4283060 ~ 4284963 (+) False AMCG00005538
TU192255 other upstream 3297248 3266742 ~ 3270839 (+) False AMCG00005498
TU193523 other downstream 690578 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1645791 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1934096 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2865801 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 3017703 9587802 ~ 9589798 (+) True G154283

Expression Profile