RNA id: AMCG00005676


Basic Information

Item Value
RNA id AMCG00005676
length 3135
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00005676
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7017945 ~ 7022898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGGCTCCCTCCTGTGTATTTCAGAGAAGGTGTGCGACACCAATGGAGATTTTGCAGATTGAATTTCTAATCCTAATCCTGTGCAGCCTGCGCGTCGGCCCCCTTCACGCCCAGCACAGGGGCCACACGTACCCGGAGATCCTGCGGGCGGCCGCCTACCGGGACCTGGGCGACCCGGTGCGCTGCAACCCGCACAACATGACGGTGACCATCTTCAAAGAGCAGTTCATCGACATGCCCTTCAGGCTGTTTGTCCTGGACAAAGACAACCGGAGCTACGACGCAGAGAAGATCGCCTCCTCCTGCAACTATGACCTCAAGCAAACCGCGCAGTTAATCCTGTTCACGACCCCCTACACCGGCTGCCATGTGCGCACACAGGGGGGTGTGGCGAGTCTGACGGTCATGGTCAGGGGGACGCTGGACGGGGGCCGCATTGACGTCACGGAGAGGGTCCCGCTGTCCTGCAGCGTCCAGCCCGTCCCAATACAGCCGCTTGTAAGCCCCGAGCAGTGCGGTAAGGACGGCGTCTTCACCATCGTGGTTTTCCGAAACGCCACCGTGCCGGGGCTCGTCCTGGAGTCGCTGCGGGTGTCCCGGGGGCAGGACCCGGCCTGCGCGCCCCTCCTGACGACCCCCGAGTCCGTGACCTTCAGGTTTCCCATGGTGGCCTGCGGCGCTCAGGCTCGGTTTATGGATGGGGCAGTGGTGTACTCTGTCAATATCGAGGCTGACAAGACTATCCTGAAAGGAAGAAAGGGTTCAATAACTCGAGACCGCACTTTCAAACTGACCGTGCAATGTAACTTTACATTAATGGGTTCAACCGAATTACACGTGAAGACCCAGAAGCAGCAGCCAGGAGAGCAAGCGGTATTGAAGGGAGAGGGGCCACTTCAGCTGGACCTGAGGTTGGCAAAAGACGCCGCCTACACCTCCTACTACGCCCCCCTGGATCACCCGGTGGTGCGTGTTCTGCAGCAGCCAGTGTTTGTGGAGGTCCGTGTTCTGAACCGGGAGGACCCAGACCTCGTGCTCCTGTTGGACAACTGCTGGGCGTCTACCAGTGACGACCCAGACGACGGCCTCCGCTGGGACCTCCTAGAGAAAGGgtgTCCCTTTTCTGGGGATGATTATCAGACCATACTCCAGGCTGTCTTGGCAGCTCCAGGAGTTTCCTTTCCCAACCACTACAAGAGGTTTCAAATCACAATGTTCACTTTTGTGGACTCCCCATCACCCCAGACCTTCCACGGCCTGGTCTACTTTCATTGTGATGTGGAAGTGTGTAAAGGGGTGAAGGAGTGCACGGTGTCCTGTGACAAAAGACAAAGGAGAAGTATCCTCCAAGATTGGACAATCCACTCTCTCCACACCTTTGTCTCCAAAGGTCCCTTCATGTTCTTCAAAGATTGAAACCTTGCTTTCTGAAACCCAACTCCGGATGAGAGCAGCGGTCTACATAGggcctgtgtttttgtttttgttttttaaatgtttgaagaGATTCTGTTTTAATGACCGTATGCAaagggtgtgtatgtgtaaagaAATTGTTGGGTTTCCAaatgaaatttatttttaaacttggtcttgtgtgtgtgtgtgtgtgactgagggAGGCAGTGATTTCAGACCTGCTTTCATATTTCGTTACCTGTGAAGACAGACCAAGAACTGCAGGACAATGCTTGTGTGCAGGAATTCAATGGATTGCTGTGTTCTGCTTGTGGCTGGATCTATTACAGACCACCGGGGGTCGCTGTGAGCTCAATGAACTGAGGAGATGAGCGTTCATGGATTCAACAGAGTGAGGGAATGGCTTTATATGAAGCATTAACATGCAATAGGAtgacagtgtatttacattaaGTATGCATGCTTATGCTTTGCATTGTTTATTCAAGCCTTTATGTATgaataatttgattttgttttctttaatacagAAAAGTTTGTGAAATTGGGTTCTTCTCACAGCTGGGATAACTTCCCCTGTTTCTAATGCCACCAGCGATTCCAGTTACCCTTACCATGTTGTAATTAAATCCCTCTATTCTAATTGAATGTCTGGGGCCTAAAAAACcctaaaatgaaatgaatgaaaaagccATGAATCCAAACAACATTAGAAATCTGTGGAGTCATCAgtgttcaaatataaatattctcAGTGTGGGCTGTTGTCATGGTATAATATATAGTTCAATACACCCAGAAGAATTTGTTGGGCTACAGAAAGGTCTACAGGTGGTTTTGAAGTTGGCAAAATCTGTGACTTTGCCAAAGGGATGTAGTGGGAATTATATGTGAGTATATCAACTTATTTAAATGCTCTTAGAGGGTGTACttgctttatataattatatatgtttgtataacCCCCTCATATTCTGAAATTGGACCTAACTAGAGAAGGAGCGTGTGGGATAAAAGTGCCGCCTTTTCTTTGGTCCAGATACCCAGTATAGGTGCTGGTTATTTTACACCCACTCCGCTGTGTCGGGACAATTAATGTGTTGTAGTGCGGTTCACTGTTCTGTGGCTGACCTTTAGGCTGTGCTTTACTGTTGCGCGGCTGGGTGTCAGCCATTTCATATCTGAATAAAGGGAGTTTGCGTCTTTTTGTGAAAGGTCATCCCTACACGAAGCCCAGATAACGAGCTGAACACAACAGGATCCTTACTTGTTCAGTACGAGTCTCATTCTTCCCTTCAGAAGTAAATAGTTTACCTCACCAAGCCACAGACATGGCTACGTGTCCGTACgctgcattttctttcatataAAATGGCGAAGGGAAGTTGCAGCTCAGCTGAATTTTTAGAAACATTACAGTAAACACACTAACAAGCCTTTCACCACAACCATTGAATAGAAACCTGTCCACCACTGCCTGCCTTCAACATGTGTGGGGTGGCCAAGACCGTGGCCTTGAATCCAGTGCTCTCTTTCAAGGTGGACACGTTAGGGGGTTGGACTTATACAAGAATATCAGGGCTGTGAGACGTCCACTATTTTATAATAAGCGAGATCATGTCAAAGTATAGGAGCCTGGCTACAGCCGTCAGTATTATAAAACCTCTATCGAGTCTAATTTTAACTCCAAAAGATCTAGATGCATAATAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193418 lncRNA downstream 82269 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 355449 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 454375 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 454375 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 760773 6240402 ~ 6257172 (-) True G153379
TU193473 lncRNA upstream 29907 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 116282 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 156730 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 255606 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 851889 7874787 ~ 7875042 (-) True G153742
AMCG00005678 mRNA downstream 1005 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005633 mRNA downstream 73593 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005631 mRNA downstream 86079 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005632 mRNA downstream 97084 6909318 ~ 6920861 (-) True AMCG00005632
AMCG00005655 mRNA downstream 145079 6825929 ~ 6872866 (-) True AMCG00005655
AMCG00005677 mRNA upstream 1287 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005680 mRNA upstream 14785 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005679 mRNA upstream 30812 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005684 mRNA upstream 79392 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005685 mRNA upstream 86320 7109218 ~ 7145807 (-) True AMCG00005685
TU193235 other downstream 521374 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 935079 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1715747 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2728053 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3927231 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 762656 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 976438 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1068850 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2067524 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2402392 9425290 ~ 9434940 (-) True G154250

Expression Profile