RNA id: AMCG00005677


Basic Information

Item Value
RNA id AMCG00005677
length 3296
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00005677
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7024185 ~ 7037056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGACAATATGGCTGCTGGCTCTGCAGAGGGGGGAAGGAGGAAGTCTTGGTTTTGACAGTCAGCCGCATCTCGAATAAGCCCCTCCAGACCGACCCGCAGCTCGATCTCCATGAATGAGGGGAGCCGGGCCGGCGCGGGATGCACTCTCTGAGCTGAGGCCACACTGCGCAAGCGAGAACCACCATGTCTTTTTTTAGGAGGAAAGCAAAAGGAAAGGAACCAGAGAAAGCCGCGGATGTTCGAGTCAGCAAAGCTCCGGTGCCAGTCCACTCCCCGTCTCTGGCCGCCCGCAACCATGCCCTCCTGGAAGCGGCGGGGCCCAGCCACATCGCCATCAACGCCATCTCCGCCAACATGGACTCCTTCGCCAGGGGCAGGACGGCCATCCTCAAGAAGCAGCTCAGCCACATGGAGGCAGCACACTTCGGTGACCTAGGGCGCTCTTGTGTGAACTACCAGGCCCAGGAGACCCGGTCCCAGCTCTCCAAGACGGTGGAGCAGATCCTGCGGGACAGCACTGCCATGCCCTACTTCATGCAGTTCATGGAGGTCCAAGGGGCCGAACACCTGGTCAAGTTCTGGCTGGAGGCCGAGAGCTTCCGCTCCACCAGCTGGTCGCGGATCCGAGCGCACAGCCTGAACTCCGTCAAGCACAGCTCCCTGGCCGAGCCCACCTCCCCGTCGACAGTCAAGAAACCCGATGGCACCGAGACCCTCCCCCTCGACGCGGAGGTGGGACGGCAGCCCCCACTGTCTTACGCCTCCAGCCCGGCCAAGGCCAACTCACACAGCCCCTCCAGGCCCCTGACCGGTAACCACTCCTGGCACTCAGACGACCGGGAGGCCCATGCACTCCGCAGGGGGCAGGGGGCGGAGACGCCCACAGGACAAGCTTCTTCCACGTcgtcttcttcctcctcctcctcctcctcttccaagACTGGGACCCCCTTTAAAACCCAATCCACCAATGCACTCAAGGACCTGTCGGACAAACTGATGAAAAGTATAGAGCGAGACGCAGTGAACCTCTTTACCAAATACATCTCTCCGGACGCGGCCCGGCCTGTCCCCATCACCGAATCCATGAGGAATGATATCGTGGCAAAGATCTGTGGCGAGGACGGGCAAGTGGACCCCAACTGCTTTGTCGTTGCACAGTCGGCTGTCTTTAACTATCTGGAGCAACAGCACTTTAGCGAATTCTTGCGGAGTCATCATTTCTGTAAGTACCAGATCGAAGTGTTGACCAGCGGCACCGTGTTCCTGGCTGACATCCTGTTCTGCGAGTCGGCACTCTTCTACTTCTCAGAGTATATGGAGAAGGAGGAGGCCGTGAACGTACTCCAGTTCTGGTTGGCCGCCGACAACTTCCAGGACCAGCTGGCTGCCAAGAGAGGCCAGTACTTCTCCCTCCAAGCCACCAACCCCCTGGGCTTCGACGACTCGGTGCGTTTAGAGATCGAGTCCAATATCTGCCGGGAGGGCGGGCCTCTGCCGGACTGTTTCACTACTCCCCTACGCCAGGCGTGGACCACCATGGAGACGGTGTTCATGCCGGGCTTCCTGTCCAGCAACCTTTACTACAAGTACCTGAATGACTTGATCAACTCTGTGCGGAGCGATGAGTTCCTCAGCAGGGCAGCCGGTGTGCCGGGACACAGCCCCCCACAGGACAGCGATAGTACCAAAAAAGCGGCGATTAAAATCCTAAAAAACTTCGACGAAGCAATAACTGTAGACATCGCCAGCTTGGACCCGGAGTCTCTGTATCAGCGTCCGTACGCTGGAAGAATGACATTCGGGAAAGTGAATGAACTCGGACAGTTCATCAGGGAGGCGGAGCCGGAGCCGGATGTGAAGAAATCAAAAGGCTCCATGTTCTCCCAGGCCATGAAGAAGTGGGTGCAGGGAAACACAGATGAGGCGCAGGAGGAGATGGCGTGGAAGATCGCGAAGATGATCGTGAACGATGTCATGCACCAAGCTCAGTACGACAAGGCCACTAAGCTATGACCCTCATGAAGACCCGGAAGCTACGTCTTTCCTCACGGCTACGGAGGGGCCCAGATTCCTGTGGGGGGAGCCAGCAACGACGACGACAACGACGAActgcatattgtatttatagGACGTTACTCCTTCATTTGTATGAAGACCGACAAGGCATTCCACGACCTCTGGCATCACGCTGTGTGTGAACTTTTAACTCTACTCCAGTCTAACACTATGAAGGCTTTTAATTGTGTGAAGAACAAGACCGAAACAAACCCAGCGAGACACAAAATAATGTTGCACAAAAGACGCACGCTggaatgaaatttaaaataagtaaaaagcCAATGACGCGACAAAGAGGCTGCTTAAGCAAGCGGGGAGGGATGGTGACATGAATGCCTCGCCCAGAAGGAGCGTAAAGCACTTGCCCCCTTGAACACGCGTGCCCACTGTGTCCATTGACCACGCGTGTCCACTGTGTCCTCTGTGTCCACTCAAATCAAAGGACTGGATGAAGTTAGCAAAGCGACAGAGGACCCAGTCGggggtttttttggtttttttttccttcttttttaatcaataaagtttattttaatgggaCCGGTGGACCTTAACCAGATTTCCAAGTTATGCCAGATTACGGTTTTATCGACAcatgcttttcttgtttttggtttgttttgtttcttttagtttcttgttattgtgttgtttttttcgtGTGAAGAACAGTCTTGAAAATGCAAGTTGAACTGCTCCTTTCCCCGTGTTCAGGAGAGACCGGAGGGGAATGTTACTGGACACGATGCCGTTGACTGCCtgtcaacccccccaccccgccatGTCATCATAGTGCACAATTGCAAGTTATTATACTTTGAAGAGTTGTAGAAACCTCCCTCTGACTCCAGCGCTGGAGGGGAAATGTACTCTCTGGCTTCCCTGTTACACAGCTGTAGTTTTATGGTTACCCTTGTGAGATTTCTACccatatataaatgtaagctCCTTTTTCTGGTGACCACAgtcctttaaagaaaaaagaaaacctttttgTATAATATGTTGCAAATAATCTCAATAATGACTGTTTCATGGGAAAGTGTACTCAGTGAATATCTTATTCTTTTGAGACGAATTGAGTTATTGTTAAgaataataagcagaaaaaaGACTGTGCATATGGTTTTTTGGTACTATGTACCATTACTATGTTTTCTGATGCCTAAGTATATGTGTACTTAatctataatatatttaaattgtgtttgatttcaaaatacatatattatt

Function

GO: NA

KEGG:

id description
K16526 AKAP10; A-kinase anchor protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193418 lncRNA downstream 88509 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 361689 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 460615 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 460615 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 767013 6240402 ~ 6257172 (-) True G153379
TU193473 lncRNA upstream 15749 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 102124 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 142572 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 241448 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 837731 7874787 ~ 7875042 (-) True G153742
AMCG00005676 mRNA downstream 1287 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005678 mRNA downstream 7245 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005633 mRNA downstream 79833 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005631 mRNA downstream 92319 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005632 mRNA downstream 103324 6909318 ~ 6920861 (-) True AMCG00005632
AMCG00005680 mRNA upstream 627 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005679 mRNA upstream 16654 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005684 mRNA upstream 65234 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005685 mRNA upstream 72162 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005683 mRNA upstream 120141 7157197 ~ 7169389 (-) True AMCG00005683
TU193235 other downstream 527614 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 941319 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1721987 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2734293 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3933471 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 748498 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 962280 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1054692 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2053366 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2388234 9425290 ~ 9434940 (-) True G154250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062126 True 660 lncRNA 0.37 2 NC_007116.7 62044316 ~ 62045691 (-)