RNA id: AMCG00005678


Basic Information

Item Value
RNA id AMCG00005678
length 393
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00005678
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7016548 ~ 7016940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTCGCTGCTGGATCGGAAGAAGAAGGCAGCCGGGGTGGGCATTGATCTTTCTCCGGGCTTTGTGCCCTCAGTTCCGAGGATGTTCAGCTGCGTGGGGTGCTTCTGGGTCCTCCTGTCCTCGGCTCTGGTTGCCATCTGCAGTTTCAGTTTCATCTCCCCGGCGTGGATTGTCAAGGAGCACCTGAGAAATAAGGACTCCGTGAGCTTTGGGTTACTGTGGCACTGCTCCGAGTCCCTGGACCACATGTACAGCTGTTACACGTTTGGAGGGCTGGGGAAATTTGCGGAGATCCCATCCAGCTCCTGGCAGGTATGCGACCCCCATTCCATCCCCATCATTGTCCGAATCAATGCGACATTCTCCAACAGGACATATATGTCAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193418 lncRNA downstream 80872 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 354052 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 452978 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 452978 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 759376 6240402 ~ 6257172 (-) True G153379
TU193473 lncRNA upstream 35865 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 122240 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 162688 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 261564 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 857847 7874787 ~ 7875042 (-) True G153742
AMCG00005633 mRNA downstream 72196 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005631 mRNA downstream 84682 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005632 mRNA downstream 95687 6909318 ~ 6920861 (-) True AMCG00005632
AMCG00005655 mRNA downstream 143682 6825929 ~ 6872866 (-) True AMCG00005655
AMCG00005654 mRNA downstream 215709 6787860 ~ 6800839 (-) True AMCG00005654
AMCG00005676 mRNA upstream 1005 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005677 mRNA upstream 7245 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005680 mRNA upstream 20743 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005679 mRNA upstream 36770 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005684 mRNA upstream 85350 7102290 ~ 7107774 (-) True AMCG00005684
TU193235 other downstream 519977 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 933682 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1714350 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2726656 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3925834 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 768614 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 982396 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1074808 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2073482 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2408350 9425290 ~ 9434940 (-) True G154250

Expression Profile