RNA id: AMCG00005679


Basic Information

Item Value
RNA id AMCG00005679
length 6093
RNA type mRNA
GC content 0.63
exon number 26
gene id AMCG00005679
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7053710 ~ 7077304 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCGAGCACTTGTCCTGCGCCTTCACCTTCTTCCTGCACGGTGACAGCAATGTGTGCACCAGTGTGGAGATCAACCAGCACCAGCCCATCTACCACCTGAGCGAGGGCCACCTCACCCTGGCACAGCAGTCCAACAGCCCCTTCCAAGTGATCCTGAGCCCGTTCGGGTTGAATGGGACCCTGACGGGCCAGTCGTTCAAGCTGTCCGACCCCCCCACGCAGAAGCTGATTGAGGAATGGAAGCAGTTCTACCCCATCAGCCCCAGCTCCAAGGAGAGCTCCGAGGACCGACCGGACGACATGGACTGGGAGGACGACTCCCTGGCCGCAGTGGAGGTCCTCGTTGCCGGAGTGCGAATGGTCTACCCTGCCTGCCTGGTGCTGGTTCCTCAGTCAGACATTCCTGCCCTGACCCCTGTGGGGTCCTCCCACTGCACAGCTGTTTATTCGGGTGGCCACCAAGTGCCTGCTTCCACACGAGACCCCGCGATCTCGTCTGTGACCCTCACTCCACCCACCTCACCCGAGGAAGCCCAGACAGTGGATTCTCAGTCTGCCCAGAAGTGGGTGAAGTTCTCCTCGGTATCAGACGGCTTCAGCGCGGACAGCACGAGTCACCACGGTGGCAAGGTCCCCCGCAAGTTGGCCAGCCAGGTGGTGGACCGCGTGTGGCAGGAGTGCAATATCAACCGTGCCCAGAACAAGCATAAAAACTTGAAGCAGAGAGCGGGCAGCACCCCAGGACAGCCCCAGGCCACCGGCCAGCCCCAGCAGCCGCCCCCCAAGCACAAGGCTGCGGAGAAGCCAGAGAAGGGGGAGAAGCAGCAGAAACGGCCCCTCACGCCCTTCCATCACCGCACTTCGGTCTGTGAGGACGTGGCCATGGAGCCCGATGGCGCCACCCAGCGCCTGGGCATCAGGGGGCAGGAGGGCACGGGCCGCTTCTCCAGCCTGCGCCCCTCGGACGTCTCTGTGGCCAAGACCCCCCAGCTCCACGGGCCCCCAGAGATGGCCGGTTCGCCCCCTCCCCCGCCGCTCAGCCCGCACCCCTGCGAACGGGGCGAAGAAGGAGCCGAGCCCATGAAgaacccctccaccccccacagCCAACACTTCTACCAGCCCGCCCCCGAGCCCTCCTGCCTGGTGCCTCAGAAAGCCGCCGAGGACCCCCGACTGGACCCCCTGGCCCAGCCCTTTCCCCCGGCCTACCCCGAGGCACTGGAGCCCACTGTGTACATGGGGGCCGCTGTCAGTCCTGACGACGACAGCGCCCACGCGCCCTGGAAGTTCTTTGTTCTTCCGCGGAGGAAAGACGCCAACTTCCCCACGCCCCAGCTGCCCGGAGACAAGCTGAGGGACGACCCCAGTGCAGCGGCCGGTCTGGACGGCATTGTATCGGTTACAGAGTTGATGGCCACCTCCAAGAAGCCCCTGAAAGTGTCTGAGGAGCGGGTGCACATGTACGTCCAGAGGAGAACCCAGTACCTGTCGGCAGCCTTTGGCGATGGCGACCACGAGCCCGACGACCCCTACGCCTTTGTGGACGGTGACGTGGAGTTCACCTTCCCGGACAAGAAGGACAAgcagggaggggagagggaggccgGCAAGAAACACAAGGGGGATGACGGCTCCAGTGGCGGCTCAGTGCCGGCAGATGGTGAGGACGCCATGTCGTTGTTCAGTCCCTCTTCCAAGAGTGACGCCCAGCGAGCGGCCGCCCACAACCGCACCGCCTCCACCAGCCTGATGCACGAGAACGACCTGGCCGTCTCCATCAACGACTTGGACAATCTCTTCAACTCCGACGAGGACGAGCTCACGCCCGGTGCCAGACGTGCCGTTAATGGGACAGACGATAAGTTTGGCAATAAGGAAGCCAAGCCGGCATCGCTTGACCATCTCTCCTGCATAAGTTCGGCTGATCTGCACCAGAtgttccccacccccccatcatTGGAGCAGCACATCATGGGCTACTCCCCGATGAACATGAACAGCAAGGAGTACTGCAGTCTGGACAATGCCTCGGGCATGACGGTGCTAGATGGCAACTCCACCCTGGGGGGCCAGTTCAGAATCGAGGTGGACGAGGGCTTCTGCAGTCCCAAGCCATCCGAGATCAAGGACTTCTCGTTCGTGTACAAGCCCGAGCCGTGCCAAGCGCTGGTGGGCTGCTCTATGTTCGCCCCGCTGAAGACCCTGCCCAGCCAGTGTATGCAGCCCATCAAGCTGCCCGAGGAGTGCCTGTACCGACCCAGCTGGAGCGTGGGCAAGCTGGAGCTGCTCAACCCTGTGCAGCCCATGACGTTCCTCAACAAGGACGGAAACATCCCCAGCGTGGGCAGTGCCATGGACCAGGACTACATCCAGACCTACACGCCGCAGACCCACACGCCCTTCATCTCCACCAGTGCTCCCCCCAGCAACGGCCCTGGCATTCTGCCCTCGCCCGCCACGCCCCGCTTCTCGGCCCCCACGCCCCGGACGCCGCGTACCCCCCGCACCCCCCGGGGCCCCTCCAGCGTCCAGGGCTCGCTGAAGTACGAGAACTCGGACCTGTACTCGCCCGCCTCCACGCCCTCCACCTGCCGGCCACTCAACTCGGTGGAGCCGGCCACTGTGCCCTCCATTCCCGAGGCCCACAGCCTCTACGTCAACCTCATCCTGTCAGAGTCAGTCATGAACCTGTTCAAGGACTGCAACTTCGACAGCTgctgcgtgtgcgtgtgcaacATGAACATCAAGGGCTCAGACGTGGGCGTGTACATCCCCGACCCCAACTGCGAGGTCCAGTACTCCTGCACCTGTGGCTTCAGCGCCGTCATGAACCGCAAGTACGGCAACGGCTCGGGCCTCTTCCTGGAGGACGAGCTGGACATCATCGGGCGTGGCTCGGATGTCAGCCGCGAGGTGGAGAAGCACTTCGAGGCCCTGCGCAGTGCCGTGCTGGAGCGGGGCGGCAGCCTGAGGGACCGCGTGCCCGACgagctggtgctgctgctgcaggaccAGTGCACCAACCCCTTCTCGCCGCTCACCACCCCCGAGAGCGACGGCCAGCCGCCCAAGGGCCTCAGCGCCCCTCCACCCTGCGTGCGCGTGGAGGAGCGGGACTGCCACAGCGACTGCTACCTGGCCCTCGAGCATGGCCGCCAGTTCATGGACAACATGTCCGGTGGCAAGGTAGATGAGACACTGGTCAAGAGCACCTGCCTGCATCACTGGGCCAAACGCAACGCTGTGGACGTCAGCATGCTGTGCTCCCAGGATGTGCTGCGGGTGCTACTGTCCCTCCAGCCTGTGCTGCAGGACGCCATCCAGAAGAAGAGGACGGTGCGCTCCTGGGGCGTGCAGGGCCCCCTCACCTGGCAGCAGTTCCACAAAATGGCGGGGCGGGGGTCTTACGgcACGGACGAGTCTCCCGAGCCCCTGCCCATCCCCACGTTCCTGGTGGGCTACGAGTACGACTTTGTGGTGCTGTCGCCCTTTGGCCTGCCCTACTGGGAGAAGCTCCTGTTGGACCCCTTCGGCTCCCAGCGGGATGTGGGCTACCTGGTGCTGTGTCCCGAGAACGAGGCGCTGCTCAACGGCGCCAAGGGCTTCTTCAGGGACTTGACGGCCGTGTACGAGTCCTGCCGGTTGGGTCAGCACCGGCCCATTTCCAAAGTGCATTCTGATGGCATTGTCCGGGTGGGTGGCACGGCTGCGAAGAAACTGGGGGACCAGCCGGTCAGCGAGTGGTTTGTGAAGGCGGCGAGCAGCAACAGCGACTCCTTTGCCAAACTCAAGCTGTACGCACAAGTGTGCCGGCACGACCTGGCTCCGTACCTCGCTACGCAGTCATTGGATAGCTCCCTGCTCACTCAGCCCAACCCCCCTCCGCCCTCCAGCCAATCGGCTTCCACGCAGGCACCCGCGTCCAACTCCACTGGCGCCCAGAGCACCCTGACCCCCAACAGCTCCACCCTCCCCAACAGCACTGCGGCCAGCGCCCCCGGCTCGACCGTCCCCCCCAACACCCCCTCCGCTGCTCTGCCCTCCTCGGGGCCAGCCGGCATGGCAAACAACATGCAGTCCGCCAAACCCGGTGCCTTCCCTCCATTTGGCAACATGACGTCGCAGGGCGGACAGCTAGGCCAGCAGCCAGGCATGCAAGGCGCAGGGGAGAGCGTGCCAGGCAACGCCCAGACCCAGGGCCCCGTCGAGCCCCCCGAGAGCACTATGGAGCGAGAGAAGGTGGGGGTGCCGACGGACGGCGATTCCCACGCGATCACCTACCCCCCGGCCATCGTGGTCTACATCGTCGACCCCTTCACCTACGAGGAATCGGAGGGGGGGGCGCACCCATCCAATGTGTGGACCCTGGGGCTGCTGCGCTGCTACTTGGAGATGCTGCAGTTCTTGCCGCCACATATCCGGAACGCCGTTTCTGTGCAGATCATTCCCTGCCAGTACCTGTTACAGCCAGTGAAGAACGAAGAGCGACACATCTACGCACAGCACCTGAAGTCCCTGGCCTTCTCAGTGTTCTCCCAGTGTCGGCGACCGCTGCCCTCCTCCACCAACGTCAAGACCCTGACCGGCTTCGGCCCAGGCCTGGCGCTGGACACGTCCCTCAAGAGTCCGGAGAGACCTGAGTGTTTGCGACTCTACACCCCGCCTTTCATCCTGGCGCCAGTGAAGGACAAGCAGACGGAGCTGGGCGAGACGTTTGGGGAGGCGTCCCAGAAATACAACGTGCTGTTCGTGGGCTACTGTCTGTCCCACGACCAGAGGTGGCTGCTGGCCACCTGCACCGACCTGTACGGGGAGCTGCTGGAGACATGCATCATCAACATCGACGTTCCCAACAGGGCTCGGAGGAAAAAGGGCTCGGCCCGACGCCTGGGCCTGCAGAAGCTGTGGGAGTGGTGTCTGGGGCTGGTGCAGATGACCTCGCTGCCCTGGAGGGTCGTCATCGGGCGGCTGGGCAGGATAGGACACGGGGAGCTGAGAGACTGGAGTATCCTCCTTAGTCGGCGCAATCTGCAGTCCCTCAGCAGGCGGCTGAAGGAAATGTGCCGGATGTGTGGCATCTCCGCCTCGGACACTCCCAGCATCCTCAGCGCTTGCCTGGTCGCCATGGAGCCCCAAGGCTCCTTCGTCATCATGCCAGACTCTGTGTCCACGGGCTCGGTGTTCGGCCGCAGCACGACTCTGAACATGCAGACGTCGCAGCTGAACACGCCGCAGGACACGTCCTGCACCCACATCCTGGTGTTCCCCACGTCGGCCTTCGTGCAGGTGGCGAGCTCCAACTACACTACTGAGAACATCGACATCGCCTTCAACCCCATCAACGATGGATCAGACGGAATGGGCATCTTTGATCTGCTGGACACAGGGGAGGACCTGGTGGACCCTGACATCATCAACATCTTACCAGCGTCCCCCACCACATCCCCTGTCCACTCGCCCGGCTCCCACTACCCCCATGGCGGCGACGGGAGCAAGGGACAGAGTACAGACCGGATGGAGTCTCATGATGAAGCTCCCAATATCCTCCAGCAGCCCTTGGCTCTCGGCTACTTCGTGTCGACAGCTAAGGCGGGCCCCCTGCCGGACTGGTTTTGGTCGGCCTGTCCGCAAGCGCAGAACCAGTGTCCCCTTTTCCTTAAGGCCTCTCTGCACCTCCACGTGTCTTCGGTGCAATCGGACGAGCTGCTGCACAGTAAACACTCCCACCCCCTCGACTCCAACCAGACCTCAGACGTGCTCAGaTTCGTGTTGGAACAGTACAACGCCCTGTCCTGGCTGACCTGCGACCCGGCGACCCAGGACCGGCGCTCCTGTCTCCCCATTCACTTCGTGGTTCTGAACCAGATGTACAACTTCATCATGAACATGCTATAATGGGCTGGGCGAGCGGGCCCTGCATGGGGAGGACCCGGCCGATGACTACAGTGCTGGACTTTATACGAGTTTGGAACGGTCTCCCGATGCAGGAGACCGCGGCGTGGGACGCTCCCCCAGGCAGCACCATCGCGGCTGCGCGGCCGGCTACCCTGTCATTGTTATATAACAGACTTAGAATATGGAAATaga

Function

GO: NA

KEGG:

id description
K15164 MED13; mediator of RNA polymerase II transcription subunit 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193473 lncRNA downstream 151 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 118034 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 391214 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 490140 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 490140 6562176 ~ 6563570 (-) False G153487
TU193483 lncRNA upstream 61876 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 102324 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 201200 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 797483 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 904726 7982030 ~ 7983931 (-) True G153778
AMCG00005680 mRNA downstream 5228 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005677 mRNA downstream 16654 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005676 mRNA downstream 30812 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005678 mRNA downstream 36770 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005633 mRNA downstream 109358 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005684 mRNA upstream 24986 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005685 mRNA upstream 31914 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005683 mRNA upstream 79893 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005689 mRNA upstream 138049 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005687 mRNA upstream 152602 7229906 ~ 7232875 (-) True AMCG00005687
TU193235 other downstream 557139 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 970844 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1751512 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2763818 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3962996 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 708250 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 922032 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1014444 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2013118 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2347986 9425290 ~ 9434940 (-) True G154250

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018025 False 7768 mRNA 0.53 30 NC_007126.7 20060643 ~ 20125331 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_13210441_13259571.mRNA True 10530 mRNA 0.48 31 CI01000304 13209728 ~ 13262698 (-)