RNA id: AMCG00005680


Basic Information

Item Value
RNA id AMCG00005680
length 4338
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00005680
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7037683 ~ 7048482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTTTCTGTACCGTGTTTTCTGTTTCCTGTTGGCCAGACTGCCCCGTGCAGGATGTCGGAGTCCGCGGGCCTGCAGTTTGTGAGCCCCTACGCCTTCGAAGCCATGCAGAAGGTGGACGTGGTGCGGCTGGCGGCGCTGAGCGACCCGGAGCtgcggctgctgctgccctGCCTGGTCCGGATGGCGCTGTGCGCTCCCGCCGACCAGAGCCACACCTGGGCCCAGGACAAGAAACTCATCCTCCGCCTCCTCTCCGGCGTGGAGGCCGTCAACTCCATCGTGGCCCTCCTGTCCGTGGACTTCCACGCCCTGGAGCAGGACGCCAGGAAGGAGCAGCAGCTCAGACACAAGCCAGGCGGCTCCAATGGAGAGAGCATCTTGGTGTCCCAGCTCCAGCATGGCCTGACGCTGGAGTTTGAGCACAGCGATCCTCTCCGCAGACTGAGGCTGGCGCTCAGCGAACTGCTGGCCATCATGAATAAGgtctcGGACTCAAATGGAGAGTTTTTCTTAAAGTCTTCTGAGCTTTTCAAAAGCCCTGTGTATCTGGAGGAAGTGGCCGATGTTCTGTGCATCTTGCAAGCAGAACTGCCCTCGCTGTTGCCCATGATAGTGGTGGCGGAGGCGCTGCTGCACGTCCGCAATGGAGAGTGGTTCCTCTGTCTTCTGGTGGCCAACGTCCCGGACAGCTTTAATGAGGtgtgcagGGGGCTGATCAAGAATGGGGAGCGACAGGACGAGGAGAGTGTGGGGGGGCGGCGGCGGACAGAGGCCCTCAGACAGCTGTGCCAGATGAACCCCTCCCAGGCGCTCAATATCCGAGCCATGGTGGTGGAGGAGTGCCACCTGCCCGGGCTGGGCGTGGCACTGACCCTCGACCACACCAAGACGGACACCACGGACGACGCCGTCAGCCCCCTGGTGTCCTTCGTCAGTGGCCTGCTGCTGGGCACCAACGCCAAAGTGCGCACCTGGTTTGGCATGTTCATCCGCAATGGCCAACAGaggaagagagagagcagctcgGTCCTGTGGCAGATGAGGCggcagctgctgctggagctggtgGCCATCCTGCCGCGGTCGAGGAGCACCCACGTGCCCAACGACAGCGACGGCGACACCGAGCAGGCCATGTCCGGATACTCGGGCCTGCGGGAGGAGTACGTGGTGAAGGCCAGCGCCCTGCTGCGACTCTACTGCGCTCTGATGGGCATCGCCGGGCTAAGGCCCACAGACGAGGAGGCAGAGCAGCTCCTGCAGCTGATGACCAGCCGGCCGCCCGCCACCCCCGCCGGCGTGCGCTTCGTCTCGCTGTCCTTCTGCAAACTCCTGGCCTTCCCCACCCTCGTCAGCACCCCCGAGCAGGAGCAGCTGATGGTGATGTGGCTGAGCTGGATGATTAAAGAAGAGGAGTATTTTGAgagTGCCGCGGGGGTATCCGCCTCTTTCGGAGAGATGCTGTTATTGGTTGCCATGTACTTCCATAGCAACCAGCTGAGCGCCATTATCGAGTTGGTGTGCTCCACTCTAGGGATGAAGATTGCTATTAAACCGAGCTCCCTAAGTAAGATGAAGACTATTTTTACACAGGAGATTTTCACCGAACAGGTTGTCACGGCTCATGCGGTCAGAGTTCCTGTCACCAGCAACCTCAGTGCCAACATAACAGGTTTCCTGCCAATCCACTGCATTTATCAGTTGCTGAGAAGCCGAGCCTTCACAAAGTACAAAGTCTCTatcaagGACTGGATTTTCAAGCAGCTGTGCGAGACGTCCACCCCCCTCCACACGCAGCTGCTGCCCCTGATCGACGTCTACATCAACTCCCTGCTGGTGCTGTATTACATCCTGTCATACGAGGAAGCGCTTCTGGTCAACACGAAATCGCTGGCTCTCATGCAGAAGAAGCCCAAGTCATACTCGGCCGCCCTGATGGACCAAATCCCCATCAAGTACCTGATCCGCCAGGCGCAGGGGCTGCAGCAGGAACTGGGCGGGCTGCACTCGGCTCTCCTGCGCCTTCTGGCCACCAACTACCCCCACCTGTGCATGGTGGAGGACTGGATCTCATTCCAGATGGTCCCGTCCAGCAGCGCTCAGCTGATGCGGATCCTGGAGCACCTGACCCTGCTGTCGGCCAGCGACCTCATCCCCTACGCCGAGGTGCTGGTGTCCAACATTAGTCTGCTGCTCAACGAGGGCGTCTCCCGCAGAATCCTGCAGACCGTCAACAAGCTCTGGATGGTCCTCAACACAGTGATGCCCAGGAGGCTGTGGGTGATGACCGTGAACGCGCTGCAGCCCTCGGTGGAGTTGGTGCGGCAGCAGAAATACACCCAGAACGACCTGATGATCGACCCCCTGATTGTGCTGCGCTGCGATCAAAGGATATACAGATGCCCGCCCCTGATGGACATCACTCTGCACATGCTCAATGGCTATCTCCTGGCCTCCAAAGCCTACCTGAATTCCCACTTGAAGGAGACGTCGGACTTCGACCGGCAGACCCAGACCATCTCCAACCTGGGGCTTTCAGGGCAGCCCGACACCCCCGAGGTGACCCGAGAGGAGCTGAAGAACGCCCTGCTGGCGGCCCAGGACAGCGCCGCAGTACAGATCCTGCTGGAGATCTGCCTGCCCACCAGTGAGGAGAGGGGCCCGGCCAGCGGCGCGGGGGGCCTCCTGAAGAGCATCCAGCACCCGGCCGCAAAGCAGGAGGAGCCGGGCGGCGGCCTGCCAGAGGGGGGCTCGGCGGACAAGCAGGGAGGGCTGCTGAGCAACCTGCGTGAGGTGCAGTGCCTAATCTGCTGCCTGCTGCACCAGATGTTCATCGCCGACCCCAACATCGCCAAACTGGTGCACTTCCAGGGTTACCCACAAGACCTCCTTCCCCTGACCGTGGCTGGAATCCCCTCGATGCACATCTGTCTGGACTTCATCCCTGAACTCCTGGCACAGCCACAGCTGGAGAAACAGATATTCGCCATCCAGCTCCTGTCACACCTCTGCACTCAGTACGCGCTGCCCAAATCCCTGAGCGTGGCCCGGCTGGCCGTCAGTGTCATGGGCACCCTGCTCACAGTCCTGACACAGGCGAAGCGCTTCTCGTTCTTCATGCCCACGCTGGCCTGCCTGGTGTCGTTCTGCCAGGCCTTCCCCCCCCTCTACGATGACGTGGCTGCGCTGCTGGTCCAGGTGGGGCAGGTCTGTGCCTCCGACGTGGCCACCAAGGCCCGGGATATCGACCCCCTCATCGCCAGGCTGCAGCACTTGAAGCGGAAGCCGGAGGAAGTGGCGGGGATTTCGAAGGTCGCTCTCCATCAGAGGTTAGCCGGAGAGCTGGCATGCGCTGACCCCGACGTGCAGCTGTGTTACCGCATCGAAGCCACCTTCATGGACATCATTAACACCACGGTCCGGGCAGTGTGAGGGACGCAACTCGACTGGGACGGAGTGCTTTCACCTCGGGGGACGGGGAGGGCATCGCCCTGCAGGGTCCCCGTAATGAACCGCAAGATTTTGGTATGCGTGTCCGCGGGCTCGACAAAGCGGTGTCCTCCCGGGTGCCCCGGATTAGAGTGACTTTTAATACTGGCCCTGTTTTGAAGCATATTTTAACTAGCTACAAATAGCACAatcacaggttttattttttatttttgtttggtaagcgtgtgtatgtttgttgttgtgagAGAACATGGGCCGCTTGTCTCACTGAGGGAGGAATCCTTGTGATGTCAGACAAGAGCAAGTGATGTATCTGTTCTCACTCAAAAGTCGCTGTActtcagaaaacacaaactggTGCAGATTGTGTCGTTACCCCGACACACAAAGCCAAACCAGTTCCTACATGGACTGTTGCTATTTTCTTTCGGATGAAAACGTGTGGGTGAAATAGTACGGACTCGGTACTTCTATAAACCTGTTCAgtgtcacatttaaaatgtatatatttatgtctcTGCCATGTCTCAAAACGAGGTAACACATTTCAGGCACACTCTTTGAATGACGTTGTTTCTGGGGAAGCATAACACGTTTTGTATATATTCTAGAAATCTTAATTGGCTATTCAGGTTCTTTCAGACACCTACAGTACTCCTAGGTCATGGAAGCAGTTGTTACTATCGGTCTGTTTTCTAGACCACTTTACATACAAacttttaaagtgtaaaatCCAATCGGGAAAAGTCTTGTATTCGTTTTCAATGCAGGTGGTTTCAGATATCCAGGTGACTTGAAATTCTGCTGTTTTGAACGTTCTTGTATTTtgtagatttagttttttccaacGTTTGTAATAAAAGCTCTTACATCCTCTTC

Function

GO: NA

KEGG:

id description
K13139 INTS2; integrator complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193418 lncRNA downstream 102007 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 375187 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 474113 6560939 ~ 6563570 (-) True G153487
TU193274 lncRNA downstream 474113 6562176 ~ 6563570 (-) False G153487
TU193131 lncRNA downstream 780511 6240402 ~ 6257172 (-) True G153379
TU193473 lncRNA upstream 4323 7052805 ~ 7053559 (-) True G153638
TU193483 lncRNA upstream 90698 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 131146 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 230022 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 826305 7874787 ~ 7875042 (-) True G153742
AMCG00005677 mRNA downstream 627 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005676 mRNA downstream 14785 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005678 mRNA downstream 20743 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005633 mRNA downstream 93331 6939812 ~ 6944352 (-) True AMCG00005633
AMCG00005631 mRNA downstream 105817 6924049 ~ 6931866 (-) True AMCG00005631
AMCG00005679 mRNA upstream 5228 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005684 mRNA upstream 53808 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005685 mRNA upstream 60736 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005683 mRNA upstream 108715 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005689 mRNA upstream 166871 7215353 ~ 7215643 (-) True AMCG00005689
TU193235 other downstream 541112 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 954817 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1735485 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2747791 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 3946969 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 737072 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 950854 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 1043266 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 2041940 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2376808 9425290 ~ 9434940 (-) True G154250

Expression Profile