RNA id: AMCG00005681


Basic Information

Item Value
RNA id AMCG00005681
length 2759
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00005681
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7146999 ~ 7151960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAAGATGTCTGCGGAACTCTAGAGCCGAGGTTTAGCTAGTTTACTTTAGCtaggttgttttcttttcttttctctttctttttggtTTCCCCTCGATCGGTGCCGAGCCGATTATTAGGATGGTATTGGCTGTTTACGATGAAACTCCGGACTCAGTATGACAGTAGAGACCCCATCGAGTCCAGAAAATTGCCGAAACTAACCGAGCTGCCAACTGTAATGCAGACTAACTCCGTCAATCTCCACAAGCAGCCAGGCGATGTCTTATCCCTAACCCTCCAGCCGGAGCTGCTCACTCGGACCCCGGACGGTCCCTCCCGGCCCGGCGAGGTGCACGTCCCGATCCCCGTCCCCGCGGGAGAGCCCAGCGGCAGGCCGGCGTCGAGGAGACCCAGAGCCGGCTCCCACCCACACCCCAACGCTCACTCCCACTCCCACGGCCGCCCCCACGCTGCCCCCAACGAGCCGGAGCCCGAGCCGGGAGAGTCCGACTCCGAGCCCAGCAGCTCCCTGTCCGAGCTGCGTTACCTTTTCCGGTGGATTCAGAAAAGTCTTCCTTTTCTAGTGATCCTTTGTGCCAAACTAGTAATCCAGCACGCCCTGGGCATTGCTGTTGGTGTTGGGTTACTTACAACTTTCCTGTATGCAAATAAAACCATTCAGAACCAGGTTTTCCTACAGGAGCGCCGCTCAAAGCTGCAGTGTGCGTGGCTGCTGCTGTTCCTGCTGTCTTCCAGCCTGCTGTTGTATTACACTTTCCTGGCAGAGACCCTGTATTACTGTTTAATCTTTGTGAACCCTAGCATCGAGGCCCTGGGGTTCTGGGACGTATTATGGACAGTGGGAGTGACGAACTTCATATTGAAGTTTCTTTTCATGGGCCTGAAGTGCCTTATTCTGTTGACTCCTTCCACCCTCACGACTTGCAGATCACGGGGACGATGGTACATGTTGACAGAGGAAGCCGGCCAGGTGTACCAGACCTTGGTTCCTGTACCTGTGTGGTTCCGGTACCTGCTCACCTACCAGGAGATGGATGGCTCTCCAGGATTGACTCTGGGCATCCTGCTGGCTTTGGTCTACCTCATTCTGAAGCTCCTCGGGCTGTTCGGACAGTGGGGCTCGCTGCAGAAAACACTCCGGATACTTTTCAATGAAGAGAATAACGGAGTGGCCGCCACGAAGACTCAGTGCAGCGAGATGGGAGACTTCTGCCCGATCTGCCAGGCTGAATTCAGACAGCCCCGAGTCCTCCTGTGTCAGCACATCTTCTGTGACGAGTGCATCTCCCTGTGGTTCAACCGTGAGAAGACGTGTCCTCTCTGCCGGACGGTGATCACCGACAAGGTCCACAAGTGGAAGGATGGTGCAACTTCTCCTTATTTACAGATCTACTGAGGGCAGCggagtgatttttaaaaatataattccatGTAACAATGTAGGTGGTAGCACAATAAATCTGTAAGGTGAAGGTCATGTACTTTTCAGCAGCTAGTGAGAGATTATAGTTGTGACTTTCACGGCACGTCATTTCAACCACAGGGGGGATATGACCATTATGATTACCGACTGCCGGCCGCAGAAACTTTTTTCTTCCCGCCTGCCAGTTTGTACCAAGGGCTTCGGTGATTGCTCTACTTTTGTAGGAAATAAAGGGCTACTCCTGATGGAACTCACCACATGACTTTACCCCCACCCCGAGCCAAGCGTTAGAAAGGTTACCCAGAAACACTTGCGAAGGGTGGCATCTCTCTCGGTCTCTTTGCATGTCCCTGGTTTTTATATTGTTCTGAATTCCTTAAGGatggaaatgttatttaattcatgttttttgcaCTTCCTATATAGAATAACTGGTGAAAGTATTTTTTGCACTTGTACAAAAAGTTATAGtattttttacaaacaaattGTAAATACTTTAAGCAtacagaatacatattttaagtacAGGTTTGATAGCAGACGCTGATATGAGTTGCATTCAAACCAAGTGCAAAATTCTGGCACTAGTTGttagtttaagaaaaaaaaaaatagaaaaaacaatccCGTCACAACTTTATGAATGAGTGACGCTCAGAGCATTTCATTTGTAGTAACTGATAGAGTAACTGACTGATgcacaaccccctccccccacaccaCCTTCTGACTAGCAAAAGGCTGCTGTGGTAAATCTCTTCCTCTTCTGGAATTGCCACTCTCTCATTCCCATTTAACAGAGAACTTGGGCTTTAAGAGAGTTGCGAAGGTCTTCAAGCATTGATGGTGCTCTTGGAAAGCTTATTGAACAGaagttacacaaacaaacatgaacacCTCGGCCCAATCCCTGAATAGGAACAGAAGTGGTTCAGGTTTGTGGTTCAACTTCTGGGTTAAACTGAACTCGGGTGCTGCACATCTGGGGTCACGTTTCTTTGTGTTCTTCCAATGAACTTTCCTtttatctgtgatttttctaaGCTTTACACACCTACTGAAAAGACTGCTAAACAAGATTTCAGGGTTTATGTTACTCCATTTAAAGAATATGGAGATTTATCCTAACAAGCTGTGTGCAGGATTTCATTTGaagcatttgtaattcagtttttcaaaagACCAAAGATTGGaatttacacttattttattaccatGTTTATCATAGTTACTATAAAAAGTTTTTGAAAGATTGATTTTAAGATTGGATTTTCCCATCTAATTTTGTGTTTGCTCAGttatttctccattaaaaaTGTCCAACAAAA

Function

GO: NA

KEGG:

id description
K22379 RNFT1; E3 ubiquitin-protein ligase RNFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193312 lncRNA upstream 484519 6608643 ~ 6662480 (+) False AMCG00005663
TU193313 lncRNA upstream 484519 6608643 ~ 6662480 (+) False AMCG00005663
TU193304 lncRNA upstream 484519 6614451 ~ 6662480 (+) False AMCG00005663
TU193268 lncRNA upstream 583521 6560899 ~ 6563478 (+) True G153485
TU193199 lncRNA upstream 710260 6435464 ~ 6436739 (+) False AMCG00005647
TU193551 lncRNA downstream 145174 7297134 ~ 7297381 (+) True G153687
TU193553 lncRNA downstream 146194 7298154 ~ 7298512 (+) True G153689
TU193564 lncRNA downstream 168655 7320615 ~ 7321251 (+) False AMCG00005694
TU193569 lncRNA downstream 208424 7360384 ~ 7361317 (+) True G153702
TU193575 lncRNA downstream 597223 7749183 ~ 7773661 (+) False AMCG00005660
AMCG00005630 mRNA upstream 210165 6933254 ~ 6936834 (+) True AMCG00005630
AMCG00005643 mRNA upstream 361140 6784162 ~ 6785859 (+) True AMCG00005643
AMCG00005662 mRNA upstream 477609 6664179 ~ 6669390 (+) True AMCG00005662
AMCG00005663 mRNA upstream 485802 6628017 ~ 6661197 (+) True AMCG00005663
AMCG00005661 mRNA upstream 528413 6602985 ~ 6618586 (+) True AMCG00005661
AMCG00005682 mRNA downstream 18565 7170525 ~ 7174305 (+) True AMCG00005682
AMCG00005686 mRNA downstream 89320 7241280 ~ 7241786 (+) True AMCG00005686
AMCG00005693 mRNA downstream 147715 7299675 ~ 7304137 (+) True AMCG00005693
AMCG00005694 mRNA downstream 155098 7307058 ~ 7334571 (+) True AMCG00005694
AMCG00005696 mRNA downstream 191048 7343008 ~ 7343639 (+) True AMCG00005696
TU193227 other upstream 658379 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 1925084 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 2585515 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2862036 4283060 ~ 4284963 (+) False AMCG00005538
TU192255 other upstream 3876160 3266742 ~ 3270839 (+) False AMCG00005498
TU193523 other downstream 108717 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1063930 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1352235 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2283940 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 2435842 9587802 ~ 9589798 (+) True G154283

Expression Profile