RNA id: AMCG00005683


Basic Information

Item Value
RNA id AMCG00005683
length 2170
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00005683
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7157197 ~ 7169389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGAATTCTTTGGGCAGTGCGCATGCTCGGTCCAGTAAGTCGTCTTTTGAGgcctcttgtgttttttttgtttttttccggTGGAATTGTGTGTGGTTGGTGGCACTGTGCGCATGCCCCGTACTGGAGCCGGTTATGGcggcggtgtgtgtgtgtccatgagGCGGGCAGAAAGCGCCATTCTTACGGACTGAGACGGCAAAGAGAGACCGAGGCCATGGCTGGCGTCTTCGACATTGACTTGGACCAGCCGGAGGACAATGTCTCCGACGAGGAACTTGAAGACGGGGCTCAGATCAGCGAATACATGGAACAATGCAGCGGCTTTGAAGTCTTTAACATAGAGAACTGTGAGAAGTTTGAAATCTCAGAGGACAGTGTCAACAAGGGAACCGAGAAGATTCGTCCCGAGTGCTTTGAGCTGCTGCGAGTCTTGGGAAAGGGTGGCTATGGGAAGGTTTTCCAAGTGCGGAAGGTAACGGGGGCCAACTCGGGAAAGATATTCGCCATGAAGGTCCTGAAAAAGGCGATGATTGTGCGCAATGCGAAGGACACCGCTCACACGAAAGCAGAGCGCAACATCCTGGAAGAAGTCAAGCACCCCTTCATCGTGGACCTCATATATGCTTTTCAGACCGGTGGCAAACTTTACCTCATCCTGGAGTACTTAAGTGGTGGAGAGCTGTTTATGCAATTGGAGAGAGAAGGAATATTCATGGAAGACACGGCCTGCTTCTATTTAGCAGAAATCTCCATGGCCCTGGGGCACTTGCATCAGAAAGGGATCATTTACAGGGACCTAAAACCAGAAAATATCATGCTTAACAACCAAGGTCACGTGAAACTGACGGACTTTGGGCTCTGCAAGGAGTCGATACACGACGGCACCGTCACCCACACATTCTGTGGGACGATAGAGTATATGGCCCCCGAGATCCTCATGCGCAGTGGACACAACCGGGCAGTGGACTGGTGGAGTCTTGGGGCCTTAATGTACGACATGCTGACAGGAGCGCCACCGTTCACTGGAGAAAACCGGAAGAAAACCATCGACAAAATTTTGAAGTGTAAACTGAACCTCCCGCCCTACCTCACACAAGAAGCCAGGGATCTGCTAAAGAAGCTGCTGAAGAGAAACGCCTCATTACGGCTGGGAGCCGGAGCCGGAGATGCCACGGAAGTGCAGACTCATGGCTTTTTCAGACACATTAACTGGGATGAACTCCTCGCTCGCAAAGTGGAGCCTCCTTTCAAACCTATACTACAATCTGCAGACGATGTGAGCCAATTCGATTCAAAGTTTACGAGCCAGACCCCTGTGGACAGTCCCGACGATTCCACGCTCAGTGAGAGTGCCAATCAAGTCTTCCTGGGGTTTACCTACGTAGCTCCGTCAGTGCTGGAAAATGTAAAAGAGAAGTTTTCATTTGAGCCAAAAATCAGATCACCTCGTCGATTTCTGGGAAGCCCACGGACGCCAGTCAGTCCGGTGAAGTTCTCCTCGGGGGACTGCTGGCCCAGAGGTCCGCCGGGGCCCGGAGCCCCAGCCGTACAGTCGCCCACGGAGTTCCCCATGGAGGTGTCAGAACAAATGGACGTGACCTCGAGCGGCGAAGCCTCGGCGCCGCTGCCCATCAGACAGCCCGGAGGCACGAGCAACGCACCCTTCAAAAAGCAGGCCTATCCCATGATCTCCAAGCGGCCAGAGCATCTACGTATGAATCTATGACCTTCAGCTGACTCTAGAattttttcttggttttgttttgttttttaaagaacactAGAAAATGATGAAACGGTGACCCCCAACCGCCCCCCCACGGCCCGTTTCCTCGCCCCTCAGACAAGCATGTGCGCAGATGAGCCGGAGTGAGAGAGACTGGCAGCGACGATTCATTTTGGTTTTCCATTCTTCCACAAGCTCAGGCCGTCAGGAGCGCCAGATGTGTTCGAGGCCTGAGTCCGGATTTCCTTTAACACAGCTGTAGCACATATGTcagataattataattataatgacatCTTTCATCCGAATTCACCCCACATCTACAGACTGGCTGAGTGAGATGTGCCGCCCTGTGTCGGTAGATTTAACGCTGTCAGAGAATCACTTCCACTGaatgcttgatttttttttatttttttatttttttttacattttctct

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04688 RPS6KB; ribosomal protein S6 kinase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193483 lncRNA downstream 17403 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 103638 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 221521 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 494701 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 593627 6560939 ~ 6563570 (-) True G153487
TU193533 lncRNA upstream 10239 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 109115 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 705398 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 812641 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 814851 7984240 ~ 8021640 (-) True G153779
AMCG00005685 mRNA downstream 11390 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005684 mRNA downstream 49423 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005679 mRNA downstream 79893 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005680 mRNA downstream 108715 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005677 mRNA downstream 120141 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005689 mRNA upstream 45964 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005687 mRNA upstream 60517 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005688 mRNA upstream 74561 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005659 mRNA upstream 112231 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005698 mRNA upstream 298302 7467691 ~ 7468500 (-) True AMCG00005698
TU193235 other downstream 660626 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1074331 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1854999 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2867305 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4066483 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 616165 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 829947 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 922359 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1921033 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2255901 9425290 ~ 9434940 (-) True G154250

Expression Profile