RNA id: AMCG00005684



Basic Information


Item Value
RNA id AMCG00005684
length 312
RNA type mRNA
GC content 0.63
exon number 3
gene id AMCG00005684
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7102290 ~ 7107774 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATCCGTGTGCATGCTGTCCCCACAACGGCTGACTTGACCGGGATTAAATGGAAGCGGTACGTGTGGCAGGGCCCCACCTCCGCCCCCATCCTCTTCCCCGTGACCGAGGAAGACCCCATTCTCTGCAGCTTCAGTCGCTGCCTGAAGGCCGACGTGCTGAGTGTGTGGCGCCGGCACCAGACCCCCGGGCGCCGGGAGCTGTGGCTCTTCTGGTGGGGAGAAGACCCCAACTTCGCTGAGCTCATCCACCACGAACTCTCAGGTGAGCGCCACGGTCGCCCTCCACTGACCCCtgcgGTACCTAACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU193473 lncRNA downstream 48731 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 166614 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 439794 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 538720 6560939 ~ 6563570 (-) True G153487
TU193483 lncRNA upstream 31406 7139180 ~ 7139794 (-) False AMCG00005685
TU193533 lncRNA upstream 71854 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 170730 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 767013 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 874256 7982030 ~ 7983931 (-) True G153778
AMCG00005679 mRNA downstream 24986 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005680 mRNA downstream 53808 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005677 mRNA downstream 65234 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005676 mRNA downstream 79392 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005678 mRNA downstream 85350 7016548 ~ 7016940 (-) True AMCG00005678
AMCG00005685 mRNA upstream 1444 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005683 mRNA upstream 49423 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005689 mRNA upstream 107579 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005687 mRNA upstream 122132 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005688 mRNA upstream 136176 7243950 ~ 7276480 (-) True AMCG00005688
TU193235 other downstream 605719 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1019424 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1800092 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2812398 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4011576 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 677780 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 891562 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 983974 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1982648 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2317516 9425290 ~ 9434940 (-) True G154250

Expression Profile