RNA id: AMCG00005685


Basic Information

Item Value
RNA id AMCG00005685
length 3663
RNA type mRNA
GC content 0.58
exon number 26
gene id AMCG00005685
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7109218 ~ 7145807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGGTTGGACTCCTGCCTTGAGGAGACCCTGCTACCTGGGAGGCCGTGGCACAAGGTCTATGAAAAGCTGAGCACAGCATTGGCCAAGGAGGTTGAAGCCCAGCTGAAGAGCAGTCCTCAGGGCCAGCTCTGTCTGGATCACCTTGGGGGACACTTTGTGGAGAACTACTTGAGCAGTTTGTCCGACCAGACTAGCTTCCCGTGTCCTCCGACACGGAGCAAGAGTGAGAAAGCCTCTTTGGAGAGAGAGGTGCTCAGTCAGCTGGACACCATGTGtgagagagcagcagagagCAGCCTTTGCCAACGGAGACCTGATGGTGACTATGCCGGTGTGTGCCAGGAGATGAGGGATTTTATCGATGATACCTATAACATTGTGCAAAAGGAGATGGAGCAAATGTTGTCTGTTGAGGAGCGAAAAGAAAagGAAAGGTTGGAGTTTGACCCGGTCCACATGGACTCTGCTTGGGCCTTAACGGCACGGAGACGCCCGCAGTCTGTAGAGAGCAAAGACCTGCACCTGACCACCCGCCGAGCGCCCGCCTTCCAGCTCAAACCTCACGAAGTCGGTGTCCTGTGTCTGAAGCTGCAGCCTCCTCCCCTGCACAGCGCTCAGAGCGAGGCGGTGGGGCACGTGAAATATGAAAGGACTCCCTGTATGCAGGTGTTTGCTACCGATGAGCAGATGATCAGTGAGTCCAGCAAGGCCCTGAACATCCTCTATGTTCACAGCGGGATCTATGAACCTTACCTGATCCACTGGCTCTTCCCGTTGCAAATTGCATTCCCACGGGCTGCGGCCAAAGgGGAACACTGTTACGAGTTGTCGATGTTTCTTCACCTCCTCATCCAGAGGTTTCCTGGCTGGCCGGAGATCTTCGCTTCGGCTGAGAATGTTCTGAGGTGTGTGGAGGAGCAGGACCCAGATCTGTTTGCTCATCTGCAGCTCTGTTCGTCTCAGAATGTCGTTTTGGACTCTAAGGATTTTCTGGTGGAGCTCATCACTCAGGAACGCGACGAGGCCCGGAAGCTCCTGGACGTCCCGGGCAGGTCCGACGGGCCACAGGCGGTCACCAGACAGCTGCTGGCCGACCCCGTCATCTTCCTGCGAAAGTGGATGGGAGAGGGATTCCTGAGTGTCCTCGACCTGCCCGCCGTTCTGCTCATCTGGGACCAGCTGTTCCTGCAGGACTGGAGCAGGACAGTGATGGAAGACTTCTCCCTGGCGGTCCTGATGTTGCTCAAGGACCCCCTGCTGGCGGCGGATGACTTTCACAGCATGAGAGCGGTGATGCTGGACCACGCAGGCCATCTGTTCACCACCGACATCCGCCAGGCGTGGATACACCTGCAGCAGGGAGGCCTGGCGGCTGACATCCCAGGGTTTAACAGATTAAATACGAGTGATATCCTACCAACCGGGCTGAAGGATGTATCTGTCAGCTTGATTCTGCGGCCGCCGACAACGACTACCGCACATCACTCTTGGCTGAAGGATTTCGATCCCCTGGCAGTCCGGCTCACCGCTTCGGTGTTTTATGGTGACGTGAAGCTCCGTTCCAAATCCAGTCTCAAAAAGCCATCTGTTGAGAAAAGGGTgccagaaaagaaaatggcGGCCGAATACAAACTGCACTTCAATGACGTCTTTCTCTTTGACTCCCTGGACCCATCAGAGTTCAGAGAAATAGATCCGTTGAGGGACAAACCTGCTGTGGTCATTAAGGTTGTCTACAGTCCCAATGTAAATGGCTTCTCTCCAGTGACGCTGGGTTGGGTCAGAGCCGACCTGTTGCGTGAAGAGAAGGCGGGCCTTCGCACACTGTGGGCTCCCGGCGAGTTCACGGCACACCTCCCCCTGCGCGCCGGGCCGGTCCCCGAGCCTCTGTCGGACCAGGGCTCAGCAAACAATTTAATAGAGCCCTTACAGAGGGGATCAGATATCCAGGTGACTGTTTACGATCCCTTCAAAGACGGTCGAAGGCAGGTAGCCAGCCCGGCCTGGGTCCAGAGCTCTCTTCCTGAGGAACCCTCTGAGCAGAATGCTCCCTGGGTCCCACACAACCCGGCTCTGGCCGTTGTGCACCAGGCCACGGCCCGCCAGCCGTTCGATCTGTACATCGATTCGGTGCACAACATTCCCGACAACGCAACTATAGTAAAGGTCACCGGGAGGATCCTGCGCTCTGGTGTGGAAGACCTTCCCGACATCCTGGCTCTTCCTGATCTCACTTCCCCGGCAAGAAGCCCGGAGTTTCACTTTCGTATGACCGTGGAAGCGAAAGATCACCAACCCTTCGACCACAACCTGCTCCTCCTGCTGCGAGTCTACACCATCAGTGCGCTCACCGGAGAATTGTGTGTCATAGGGAACTGCATCGTCCGTGCATTCAGTGACCAGGAGCAACTGAACGCAGGGGGGCACCAGCTCCGCCTGCGGGGGGGGATGCCCTCGAAGGATCAGACCCCCCTGACCGATGCGTCCCTCAGTCACCAGCCAGTAATTCCCTGCTGCACCCTCCTCATCCGAATCCTACCACACAGGCCTGATGTGTCACCCTCTCCAGACTATCGCAGTGGCTTTTACTTCACCGACAGAGCCAAACCCAACCAATCAGAGCTGGGAATCATCTCCACCTTCCAGAGGAACACTGAGTTCCCTAGAACCGTAGGCGAGATGGTTCAACAGCTGGTGACCAAGGAGCAGGCCAACGATGGCCTGTACGTGAATGCCTTTGCCAGAGTCCTGAGAGGATTTGAAAGTTCCCATCTCCCCGAGCTGCCCCAGGGCTGGGGAGGCGAGGAGAAGTTTGTGACCCGTCGCCACGATTTCCGCAGCCTGCAGATGTCCCCGCGCTGGACCGATCAGTCTACGGTGCTGCACCCCTACCTCCATCCCCACACGGTGCTGCTGGTCCAGCTGTTCGGTCTCAGTGCTGTTTACATCCCGGACCTCCGTGGGCAGAGCTGTGGCACAGTGAGTTCCCGACCCGGACACGAGTTGAAGCTGGACACCAATTCACAGCTGGGCTGGGCCGTGGTCCCACTGTTCGACGGGCCTTTTGCGTGGATTGGGGTTCACCATTCGCCGCTTTTTCAGGGCAACCCCAACGGTGGCTTCCTGGCGGCCGTGGTGTCTGGCCCACCGCAAGGCGCCATCGAGAGCGGCCTGAGAGACAAGACGCTCAAGCCGCTGAAGAGCTTCGGCAGCGTGACCGTGGAGGTGTGGGATGGGCACTATCTTGATGATGAACGCCACGATCTGCCTATAGTTGACAGCCTCCTCCCCATGGACAACAAGAAGAAGTTTGCGAAGACACAGGCCAGAAAGGCAGGTAAAGCCCTGTCCCAGCTGGTCCTGCAGAGTCTTGACGCCAAAACAAGGAAGCAGGGAGTCGGCAGCGCGGAGTATCGGCGAGAGGAGCATTTCTATGAGGAGGCGATGGGAGACACCTTCTACGCCCTCATGGTGGCGCGCCGCTCCAGACTCCAGGCTGACGGGCCCAGTGCCCAGCCAGGCAGTGCGCTCTGCTCAGTGGCGCCGCTACGGGCCCTGGCGGCGAGGCCCGGCCGTCGCAGCCTGATCACAGCCCTCATGACCACGGAGCAGCCAATCGGCGCCGGGAGGCAGAAGTGTCCCTGCGGCCGCCATTAA

Function

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0010647 positive regulation of cell communication biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0023056 positive regulation of signaling biological_process
GO:0009967 positive regulation of signal transduction biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193473 lncRNA downstream 55659 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 173542 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 446722 6647316 ~ 6662496 (-) True G153514
TU193273 lncRNA downstream 545648 6560939 ~ 6563570 (-) True G153487
TU193533 lncRNA upstream 33821 7179628 ~ 7202286 (-) True G153678
TU193539 lncRNA upstream 132697 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 728980 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 836223 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 838433 7984240 ~ 8021640 (-) True G153779
AMCG00005684 mRNA downstream 1444 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005679 mRNA downstream 31914 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005680 mRNA downstream 60736 7037683 ~ 7048482 (-) True AMCG00005680
AMCG00005677 mRNA downstream 72162 7024185 ~ 7037056 (-) True AMCG00005677
AMCG00005676 mRNA downstream 86320 7017945 ~ 7022898 (-) True AMCG00005676
AMCG00005683 mRNA upstream 11390 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005689 mRNA upstream 69546 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005687 mRNA upstream 84099 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005688 mRNA upstream 98143 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005659 mRNA upstream 135813 7281620 ~ 7292372 (-) True AMCG00005659
TU193235 other downstream 612647 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1026352 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1807020 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2819326 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4018504 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 639747 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 853529 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 945941 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1944615 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2279483 9425290 ~ 9434940 (-) True G154250

Expression Profile