RNA id: AMCG00005687


Basic Information

Item Value
RNA id AMCG00005687
length 399
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00005687
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7229906 ~ 7232875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGAGAATGGAGCAGACTGCGATGTACCTCAGAAGCGCTCGGGACCAGCCAAGGAGCTGCAGAACGGGAACTTCGCAGacGCCTCATCTCTGAGCGAGAGGAAGCAGCGCGATAAAGAGGAGAGGCTGGCCATCGTGCTGTGGAAGCAGCCACTCATCACCCTGCAGTATTTCTTCCTCGAGACCCTGATAGACTTGAAAGAATGGACAGTAAAGCTATGGCATCGGAGAGGCTTGGTTTTCACTGCGTTGGTGCTTTTTATCTTCTTCTCTGTTGCTTATTCCATCGAAGGAGTACATCAGAAGTTTGTGCAGTACATggagaggaagttcctgtggtGCGCCTATTGGGTAGGCCTGGGCATCCTGTCTTCATTTGGCCCcgtttataattaa

Function

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193533 lncRNA downstream 27620 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 90112 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 176347 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 294230 6935430 ~ 6935676 (-) True G153586
TU193332 lncRNA downstream 567410 6647316 ~ 6662496 (-) True G153514
TU193539 lncRNA upstream 45629 7278504 ~ 7278765 (-) True G153681
TU193615 lncRNA upstream 641912 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 749155 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 751365 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 1341317 8574192 ~ 8588222 (-) True G153980
AMCG00005689 mRNA downstream 14263 7215353 ~ 7215643 (-) True AMCG00005689
AMCG00005683 mRNA downstream 60517 7157197 ~ 7169389 (-) True AMCG00005683
AMCG00005685 mRNA downstream 84099 7109218 ~ 7145807 (-) True AMCG00005685
AMCG00005684 mRNA downstream 122132 7102290 ~ 7107774 (-) True AMCG00005684
AMCG00005679 mRNA downstream 152602 7053710 ~ 7077304 (-) True AMCG00005679
AMCG00005688 mRNA upstream 11075 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005659 mRNA upstream 48745 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005698 mRNA upstream 234816 7467691 ~ 7468500 (-) True AMCG00005698
AMCG00005691 mRNA upstream 588319 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005692 mRNA upstream 619791 7852666 ~ 7869220 (-) True AMCG00005692
TU193235 other downstream 733335 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1147040 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 1927708 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 2940014 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 4139192 3071860 ~ 3090714 (-) False G152645
TU193605 other upstream 552679 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 766461 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 858873 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1857547 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 2192415 9425290 ~ 9434940 (-) True G154250

Expression Profile