RNA id: AMCG00005690


Basic Information

Item Value
RNA id AMCG00005690
length 1836
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00005690
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7799828 ~ 7810698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACGTCTCTTGGGATTCCGGGTCTCCACCGCCACTTGGATGGCTTTGGTGTCGAGAAGATGGAGAATGCTTCTGGTGCTGAATCTGTTGGTTGTGGCCGGGTTCATGGCTTTCTGGGCCAAGTGCAAGTCGAGGACCAGCACCGGCATCGGCCAAGACCGTCTCAGGAGACACCGGCAGGACAACGTCACGGCCCCGGGTTCGAGCGTCAGCCACGACGCGCTGCTGAGGAGGCTCGGGTCCCTGGAGGAGGTGGTGTACCGGCAGCTCAACGGCTTGTCGAAGACCCTCGGGCTCCTTGAAGGTTACGGGGGCCGGGGGAAAGGGGGCTTACCCGCAACCTTGACGCCTGAGGAGGAAGCGGAGGCCAAAGATCTGAGGGACAAGTACGGCTACAACGCGTATCTGAGCGAGAGGATATCGCTGGATCGATCCATCCCAGATTTCCGTCCGAACAAGTGCAAAGAAGTGACGTACCCAGACGATCTTCCCCAGATCTCTCTGATCTTCATATTCGTGAATGAAGCCCTGTCCGTCATCCTGCGCTCTGTCCACTCGGCTGTCAATCACACGCCTGCCCACCTCCTCAAGGAGATCATTTTGGTGGACGACAACAGCGATGACGAGCAACTGAAGGGCCCCCTGGAGGAGTACGTCAACAAGCGATACCCGAGTCTGGTGAAGATTGTCCGcaacaggaagagagagggtCTGATCCGCGCTCGCATCGAGGGCTGGAAAGTAGCCACCGGTGAACTGACTGGATTTTTCGATGCCCACGTGGAGTTTACGCCATCTTGGGCTGAGCCAGTTCTGTCCAGAATCAAGGAGAACCACAAGCGGATCATTCTCCCGTCCATCGACAACATCAGGCAAGACACCTTCGAGCTGGAGCGCTACGACAACTCGGGGCATGGATACAACTGGGAGCTGTGGTGCATGTACATCAGCCCTCCCAAACAGTGGTGGGATGCAGGAGATAACTCGGCACCGATCAGGACCCCTGCGATGATCGGCTGCTCTTTTGTGGTGAACCGCAGTTACTTCGGGGAGCTGGGATTACTCGACCCGGGCATGGACGTGTACGGAGGAGAGAACATAGAACTGGGAATAAGGGTGTGGCTGTGTGGAGGAAGCATGGAGGTGTTGCCCTGCTCCAGGGTGGCTCACATTACCAGGATAAAGAAGccatacaataacaatattgtGTACTATGCGCGCAGGAATGCTCTTCGCGTTGCTGAAGTCTGGATGGACGAGTACAAGTCGAATGTGTACCTGGCATGGAACCTGCCTATGGAGaatcaTGGGATAGATTACGGGGACATCTCAGAAAGAGTGGCTCTGAGGAAGagactaaaatgtaaaaactttcAATGGTACCTGGACAATGTGTATCCAGACATGAAAAGATACAACAACACTATTTATTACGGGGAGATCCGTAACTCCAAAGCTACACACCTGTGTGTCGATCAGGGGCGCAAGGAGAATCACACGTCGATTCTGCACCCATGTCACGGCTGGGGGGCGCAGCATGGAAGATACACCAAGGAGGGGATGCTGTACCTGGGACCGCTGGGGAGCACAGGGGAAGAAACCCGCTGCCTGGTGGATGACAGGGTCAGCAAATCTCCTCAGCTCGCGGACTGTGAGAAAATCCTTAACGTGCGACAGAAAACATGGCACTTCTCCCAGAATGACGCGATTATCAACAGGGACACGGGCCGGTGTTTGGAAGTAGTGCCTACCAATGAGTTATTCGGCTACTTGCTGGTTCTACATTCGTGCACCGGCCAGAAGTGGAACATCAAAAACACCATGAAGCGGCAGTGA

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193575 lncRNA upstream 26167 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 26167 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 438511 7360384 ~ 7361317 (+) True G153702
TU193564 lncRNA upstream 478577 7320615 ~ 7321251 (+) False AMCG00005694
TU193553 lncRNA upstream 501316 7298154 ~ 7298512 (+) True G153689
TU193620 lncRNA downstream 76868 7887566 ~ 7887780 (+) True G153747
TU193728 lncRNA downstream 403206 8213904 ~ 8230590 (+) True G153815
TU193741 lncRNA downstream 440603 8251301 ~ 8278074 (+) True G153816
TU193795 lncRNA downstream 534980 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 919105 8729803 ~ 8730155 (+) True G153955
AMCG00005660 mRNA upstream 11957 7772167 ~ 7787871 (+) True AMCG00005660
AMCG00005658 mRNA upstream 191914 7601285 ~ 7607914 (+) True AMCG00005658
AMCG00005657 mRNA upstream 248574 7549718 ~ 7551254 (+) True AMCG00005657
AMCG00005656 mRNA upstream 300140 7494110 ~ 7499688 (+) True AMCG00005656
AMCG00005699 mRNA upstream 388242 7400104 ~ 7411586 (+) True AMCG00005699
AMCG00005710 mRNA downstream 139808 7950506 ~ 7953214 (+) True AMCG00005710
AMCG00005714 mRNA downstream 154361 7965059 ~ 7966067 (+) True AMCG00005714
AMCG00005713 mRNA downstream 156753 7967451 ~ 7975239 (+) True AMCG00005713
AMCG00005711 mRNA downstream 169401 7980099 ~ 7984901 (+) True AMCG00005711
AMCG00005712 mRNA downstream 175823 7986521 ~ 7989375 (+) True AMCG00005712
TU193523 other upstream 533857 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1311208 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2577913 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3238344 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 3514865 4283060 ~ 4284963 (+) False AMCG00005538
TU193739 other downstream 405192 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 693497 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1625202 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1777104 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 2070684 9881382 ~ 9883955 (+) True G154330

Expression Profile