RNA id: AMCG00005692


Basic Information

Item Value
RNA id AMCG00005692
length 795
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00005692
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7852666 ~ 7869220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTTTGGGAGAAGCCCACAATTGGGAGGCAGACAGAAGGACTGAGCCGTCCAGGGACAGCCTCCCTCGCGCTCTCTGAGTTGCTGCTCCGACAGATGGAGGTCACGGGCGCGCCTAAGAGGGGAGGTTCAGAGGGAGAGGGACCATGGACCTTGTGCGATGGGATGGAGGCTCAGCAGACACAGCCAGTGGTGCTGCGGTACCCGATAGAGTATGGTCCATGTCCTGGCCTGGGTCAGTACTCGGGCCTCATAGCTGCGGTGTCCAAGGTCCAATCCAACAGTAACTCAAACACCTGCTTCATAAAATCTATTGGAGCTGAGATCCATATCTCTGGGGGGAAGATGCCATTCCACCATGTGACGGCCGGCCTGCTGTACAAAGGGAATTACCTCAGCCGCTCGCTGTCCGAGGGGAGCGACAGCGAGCGATTAGCCAGCATCTCGGTGGAGGAGCTCGATGAGATCCGGGAGGCCTTCCGGGTGCTGGACCGCGATGGCAACGGGTTCATTTCCAAGCAGGAGCTGGGCATGGCCATGCGGTCGCTGGGGTACATGCCCAGCGAGGTGGAACTGGCCATAATCATGCAGCGGCTGGACATGGATGGAGACGGCCAGGTGGACTTCGACGAATTCATGACGATACTGGGCCCCAAACTTCTGTCTTCCGAAACGAGAGAAGGGTTCCTCGGCAACACGATAGACAGCATATTCTGGCAGGTAGGCGCGGGGCGGGAACGGACTCTGTCAGCCTCAGTGGCGGTTACTGAAAGTGTGATGTGGGGGAATTAG

Function

GO: NA

KEGG:

id description
K23849 CABP7_8, CALN2_1; calcium-binding protein 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193539 lncRNA downstream 573901 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 650380 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 712872 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 799107 7052805 ~ 7053559 (-) True G153638
TU193418 lncRNA downstream 916990 6935430 ~ 6935676 (-) True G153586
TU193615 lncRNA upstream 5567 7874787 ~ 7875042 (-) True G153742
TU193660 lncRNA upstream 112810 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 115020 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 704972 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 860583 8729803 ~ 8730149 (-) True G154010
AMCG00005691 mRNA downstream 24114 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005698 mRNA downstream 384166 7467691 ~ 7468500 (-) True AMCG00005698
AMCG00005659 mRNA downstream 560294 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005688 mRNA downstream 576186 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005687 mRNA downstream 619791 7229906 ~ 7232875 (-) True AMCG00005687
AMCG00005718 mRNA upstream 27126 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005715 mRNA upstream 49459 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005716 mRNA upstream 84911 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005717 mRNA upstream 106838 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005702 mRNA upstream 120136 7989356 ~ 7999100 (-) True AMCG00005702
TU193605 other downstream 64345 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1356095 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1769800 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2550468 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3562774 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 130116 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 222528 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1221202 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1556070 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2446160 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile