RNA id: AMCG00005697



Basic Information


Item Value
RNA id AMCG00005697
length 687
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00005697
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7343988 ~ 7346979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCATCAACATGTTCTAGGGCAACCAGTCCCAGGGTGCTTTGGGAGAGTCTCTTCCATAAACTGGAGTGGCACCACGGGACGCTGTTCACCCCAGTGAAGAAGAAGAGACTGATCTGTCTGCTGGATGACCTCCACCTGGCCCAGGTACACTTCCCCCCAAGAACcAAACGGCCCTCCCCTCTTGGTTCAGTAACAATCCATCGTGGTGATGGCTGCTCCCTGGTTCAGGTTGACACCCATGGCAGCCAGCCAGCGTGCGAGTTGCTGCGCCAGCTGCTTGACTGTGGGGGTGGCTTTGACCCAGTTTCCCTGGAGTGGAGGTTGGTGAGGAACATTACCTTCCTAGCCGCTGTCGACGTGAATGTCCCGGCCAACGCGCCCAAACCCAGCGCCCGCCTGCTGAGGCACTTCAGTCTCTTGCCCTGCTCTTACCCGAGTTTTGATGATCAGTACAGGATATTCAGTACTCTGATGAATGTCCATTTCCTTCAGTCCTCTCCTGCACTCAAGACACGCGACACCAGCTCCACAATGCCTGCTGCCCTCAGAGATCTCCTTTCACCCGTCACCTGCGTGACTATAGAAATCCAGGACCGGCTGAGAACCATGTTCCTGGGGACCCCACAGAGGAGCCACTACCTATTCACCCTCCGGGACCTGGGGAAAATATTCAGGTACAAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU193564 lncRNA upstream 22737 7320615 ~ 7321251 (+) False AMCG00005694
TU193553 lncRNA upstream 45476 7298154 ~ 7298512 (+) True G153689
TU193551 lncRNA upstream 46607 7297134 ~ 7297381 (+) True G153687
TU193461 lncRNA upstream 186113 7102205 ~ 7157875 (+) True G153626
TU193304 lncRNA upstream 681508 6614451 ~ 6662480 (+) False AMCG00005663
TU193569 lncRNA downstream 13405 7360384 ~ 7361317 (+) True G153702
TU193575 lncRNA downstream 402204 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA downstream 415715 7762694 ~ 7773661 (+) False AMCG00005660
TU193620 lncRNA downstream 540587 7887566 ~ 7887780 (+) True G153747
TU193728 lncRNA downstream 866925 8213904 ~ 8230590 (+) True G153815
AMCG00005696 mRNA upstream 349 7343008 ~ 7343639 (+) True AMCG00005696
AMCG00005694 mRNA upstream 9417 7307058 ~ 7334571 (+) True AMCG00005694
AMCG00005693 mRNA upstream 39851 7299675 ~ 7304137 (+) True AMCG00005693
AMCG00005686 mRNA upstream 102202 7241280 ~ 7241786 (+) True AMCG00005686
AMCG00005682 mRNA upstream 169683 7170525 ~ 7174305 (+) True AMCG00005682
AMCG00005695 mRNA downstream 4215 7351194 ~ 7355784 (+) True AMCG00005695
AMCG00005699 mRNA downstream 53125 7400104 ~ 7411586 (+) True AMCG00005699
AMCG00005656 mRNA downstream 147131 7494110 ~ 7499688 (+) True AMCG00005656
AMCG00005657 mRNA downstream 202739 7549718 ~ 7551254 (+) True AMCG00005657
AMCG00005658 mRNA downstream 254306 7601285 ~ 7607914 (+) True AMCG00005658
TU193523 other upstream 78017 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 855368 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2122073 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 2782504 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 3059025 4283060 ~ 4284963 (+) False AMCG00005538
TU193739 other downstream 868911 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1157216 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2088921 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 2240823 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 2534403 9881382 ~ 9883955 (+) True G154330

Expression Profile