RNA id: AMCG00005702


Basic Information

Item Value
RNA id AMCG00005702
length 3348
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00005702
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7989356 ~ 7999100 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGTATGCGGGCGGGGTGCGCTTGCGTGTCTGGTTGCGGCTGCAGCGGGGGTTATTTTTGGCTCTTGTCAATCGAGGCTCGTCCCTCTCGGTGCACAAAGGGCAAATCATTCCTCCCCGACAGGAGCCCAGATCGCACAGTTTCAGGACTGTTTGTGTATGGTGTCAGATACTTACTGGTGCGGGCTGGGATGCAGGACTGAGCCGGAGAGCGGGACTGGTTTTAAGGACATGCTGCCCGTTCGAATCCCATAACCCCGGGAACTACGTAACACAGGATGACGAAGGAGGAGGAGATCCCAGACTGGGTGGGGGCGAAGGAGTTCTATGACAAATATGACCCCAAGGAGATCCTGGGAAGGGGTGTGAGCAGCGTTGTGCGCCGCTGTATACACAAGCTCAGCAGCCAGGACTACGCGGTGAAGATCATAGACATCGCATCAGAGAAGATGTCCCCCCACGAGGTCCAGGAGATCCGGGAGTCCACGGCCAAAGAGATCGAGATCCTGAAGATGGTCTACGGCCAAGATAACATCATCCAGCTGAAAGATTGTTTTGAGTCCAAGGCCTTCTTTTTCCTGGTGTTTGACTTAATGAAGAAAGGAGAACTCTTTGATTACCTCACTGAAAAAGTAACTTTAAGCGAGAAGGAAACCAGGAAGATCATGCGTGCCTTGCTGGAAGTGGTCCAGTTCCTGCATTCCAAGAACATCGTCCACCGGGACCTGAAGCCCGAGAACATCCTCCTGGACGACAACATGAACATCAAGCTGACCGACTTTGGGTTCTCCTGCCAGCTGCAGCCCGGCGAGAGGCTCAAAGAAATCTGTGGCACACCTGGCTACCTGGCTCCCGAAATCATACAGTGCTCCATGGACCAGGACCACCCAGGATACGGACTAGAAGTCGATCTCTGGAGCTCGGGGGTCATCATGTACACGCTGCTGGCAGGATCCCCCcccttctggcaccggaagcaGATGCTGATGCTCCGCATGATCCTGAGCGGCAGCTATGACTACAGCTCCCCGGAGTGGGAAGACCGCTCGGACACAGTCAAGGATCTGattTCTCGGCTGCTGGTGGTCGACCCAGAGAAGAGGTACACGGCGACCGAGGCCCTGGCGCACCCCTTCTTCCAGCAGTATGTCGTACAGGAAGTCCGTCTCCTCAGTCCTTACAGGAAGTTCAAGGTCATCTGCATGACTGTGCTGGCCAGCGTCCGGATTTACTACCAGTACCGGCGCGCAAAGCCCGTCACCAAGGAGGTCGTCACCCGAGATCCCTACGCCCTCAAGCCCATCCGCAAGCTGATCGACGCCTGCGCTTTCAAGATCTACGGACACTGGGTGAAGAAGGGCCAGACTCAGAACCGGGCGGCCCTGTTCGAGAACACGCCCAAGGCTGTGCTCCTCTCGCTGGCCGCCGAGGCAGACGACACGCTGGCTTTTCagtaaagaaacacacaaatgatTTGAGTGGAATCGCAGTGCTTCAGCCAGTGCGTCCCCCGAAGGTCTTATTTCAGCACAAAACAGGAGGTGGAAGTCAGTGGCCGAGGGTCCGAGAGCCTAGAGAACTGTAGAAGGATGGCAGGCCATAATGTTCAGTATTGACTTCTTTGTTCAAGCGCTAGAGGTGGCCTCTTTCTGGTTTTATTTCACAACTGTTCCTCATTGAACAGTAAGGAAATTTTTTTTTGAACGAAGCACCTAACAGTTTAATATCATTTTCAATGCAGCCTGACTTTGGCAAGTAACGAATGCACCCGTGTGCGTATTCCCGTGCGTATCACTCTGCCTGTGCCCGACCTAACGCAACGTTCATAGCGGCTTCTGCTGAAAAAACTGCAATTAACCTGTATACTTGAATTAGCAAGGAGTGAAATGTTCAGTGCCTTATGTATTTTGAGACattttgtgtgtgggtttgattttattatctTCAGACTTCTTAATAGGTATGCAGAAGGAATTACAGCGagtttaaacatgtattattgtaCAATAACTATTTTCTTTAGACgataaatgtaaaagtatagGAAAAGCAAAAAGGGAGTTTGAATCTTACGTACTGAAATTGCATGAATAATGAGATACTCCGGTGCAACTTACTCACTGGAACATGTAAATTAACAGGACCTTAGAAAAGCCATAGGATTCAGTCAATGGACAGAATTTCCCCAACAGTGAGATTATGCTGCTTTTAAGATCATGGATCATGGAACAACTTTCCAATCTGAAGTGAAAATGTTCACCCTGTCTTATAGAGGTTCTCTCTCTGGGTTACTACTCTCTAGTTTTCACACGCTTGTGCTTTTAAATTCCCCTTCTCTTTTTGCTAGGAGGAATTACAAGGCTTAATCCCCGACTTGATTTAACTACGTCAGATCCCTACTGCTTGTCAGGCAATTGTGTTTTGTGACATCAGTTTAGTTTTCCTGCTGTAACAGAACTTGCGATAACACTTAGTCCTAAGAAAATGGTCACCCTCtttatggattttaaaaaaatcctgtGTTCACAAATGTTCTGTACTGGTTGGCTGTCTGTGGTCTTGAGGGATAAACACGTCCAGAATAAGCAACATGCGATGTCATAGAAGTCTAATTTCTGCACAAAATGACAGGAGAGGTTTATTCTAGCACTGTTTACCTATTTAATTACACACAATAGGTGCTTCGTATGAGCAGGGTTGTCTCTACTGGTGCAAGCACTTGACAGTTTGACCAAGCTTGAAGTAATATGCTAAGACATCAGAAAGCAACTCTATTTACAATGAGGTGTCAAGGTTTTtggaaatggtttaaaaaaacacgAGCAAAGCTTCACAGTTGAACTCTCTTATCGGATTTGTATATGATAACACTCAGGTTTCAGGTAACCATTTTCGAAtcgattaaaacattttcaaacttgaTCGAACAGGTGGAACACACTGTGACCTGCGAGGATACAGGCgttgctgttttgtattttaaacagcgtatttaaatatgtatatttaagagTATGCTTGTTGTTTTGAGAAATaaagctgtattttaatattcgTTATGAACAAATATCATGCTTCTCTGTGCCCATGTGAGGCCGTTACAACTAATTGTCCTGTTCAGTCCTgagtgttttctgtttctgtgctgaAGGGAAGGTAAACAAGGGATTCTTTATTCTTTACTGAACTGTGAATAATGCAAACGTCTTTACACTCACATTAAAGGACGCTTCTCATTGTGTTTTTCCACATGAATGCATGAATAATTATTATGACAACAATTCAGTTATGAGCCCTTTAAACCCGAGAGAAAAACACAGTACTCGTTTAATGCAGCACTGGAGAA

Function

GO: NA

KEGG:

id description
K00871 PHKG; phosphorylase kinase gamma subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193660 lncRNA downstream 5425 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 114314 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 710591 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 787070 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 849562 7139180 ~ 7139794 (-) False AMCG00005685
TU193946 lncRNA upstream 575092 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 730703 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 988181 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 1096571 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 1096571 9095671 ~ 9108363 (-) True G154150
AMCG00005717 mRNA downstream 11576 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005716 mRNA downstream 23096 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005715 mRNA downstream 39222 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005718 mRNA downstream 87984 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005692 mRNA downstream 120136 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005704 mRNA upstream 242 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005701 mRNA upstream 24432 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005703 mRNA upstream 37928 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005734 mRNA upstream 103845 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005733 mRNA upstream 105366 8104466 ~ 8107046 (-) True AMCG00005733
TU193605 other downstream 201035 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1492785 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1906490 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2687158 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3699464 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 236 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 92648 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1091322 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1426190 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2316280 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017746 True 1213 mRNA 0.47 9 NC_007126.7 5723913 ~ 5740358 (-)