RNA id: AMCG00005703


Basic Information

Item Value
RNA id AMCG00005703
length 1395
RNA type mRNA
GC content 0.60
exon number 8
gene id AMCG00005703
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8037028 ~ 8066223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTTGGCCGTCCAGCAGACAGGGATCAGACAGAGGACTCCGGAGATGATGAAGACCACGCCCGCTGTGATGCCCACCTTGGCTTTCGATGACTCGTCCTCCACGCAGTTGACGTTCAAAGAATTCTCCACGAAGATGTCTGAAGAAGAGGGATATGAGAAAAGGATAGTGGAGGGAGCTGAGGGCTTAACAACGCACGACATCAGGGTGAAGCACCTGTCGGCACTGGAACTGGTCCGACTGGTTTTGGGTGCTGTTACAGTGGGCTTCGGCGTGAAGGACACGTTTCAGACGGGGACGGGCCCTTCACACCTTCAACGGCCCCCTGTTTCAGCTCTCCAGGGGGTGGGGGACAACAACAAGGAAGGGCATGACAGAAAGTGCACCAACTGCACGGAGGACGAGGCCAGCAAGCCCAGGATCATCGTGAGCTCAGGGGTGACCTTCATCGTGGCGGGGCTGCTGCAGCTCACCGCCGTCTCCTGGACTGCCAACGTCATCATCGTGGACTTCTACGACCCGCTGCTGGAGGAGACGCAGAAGAGGGAGTTCGGGAACTCCCTGTACTTCGGCTGGGTTGCCTCCTGTCTCTTGGTCCTCGGGGGAGCCCTGCTCTGCTGCTCCTGTCCACCCAAGCAGCACAGATACGGCCCATCCAGAGTGGCTTACTCGGTGGCAAAGCTCACCTCGGCCACCAGCCACGACATGAAAGACTACTGCACCAACTGCATCGAGGAGCAGTCCAACAAGTCCAAGGTGATGATCGTGTGTGGGGTGACGTTCATCGTGGCCTCCCTCATGCAGCTGGTGCCCATCTGCTGGTCTGCCAACACCATCGTCAGGGAGTTCTACAGCCCCATCATCCCCGATGCACAGAAACGGGAGATCGGCGCCTCCCTGTATGTGGGCTGGGCCGCCGCCGCCCTGCTGCTCATGGGGGGGTCCCTGCTGTGCTGCAGCTGCCCCCAAAACGAGGTCAAATACAACCCCCCCAGGATGGCCTATTCCACCAGCAGGTCCATGGCCCCCAGTGGCTATGACCGGAGAGATTACTGCACCAACTGCATCGAGGACGAGGCCTCCAAGGCGAAGGTGATGATCATCTCGGGCATCCTCTTCATCATCTCCGGCGTCATGCAGCTCATCCCCGTGTGCTGGTCGGCCAACACCATCATCAGGGACTTCTACAACCCCCTGCTGAATGACGCCCAGCGACGGGAGCTGGGCGCCTCTCTGTACATCGGCTGGGGCGCCGCCACCTTACTCCTGATCGGGGGGGCACTGCTCTGCTGCTCCTGTCCCCCCCGAGAAAAGAAGTACATGCCCTCAAGGATGGCTTACTCTGCCCCCAGGTCTGCAGGTGGGGGTTACGACAAGAAAGACTACGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193663 lncRNA downstream 15388 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 53097 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 161986 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 758263 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 834742 7179628 ~ 7202286 (-) True G153678
TU193946 lncRNA upstream 507969 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 663580 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 921058 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 1029448 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 1029448 9095671 ~ 9108363 (-) True G154150
AMCG00005701 mRNA downstream 11316 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005704 mRNA downstream 35623 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005702 mRNA downstream 37928 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005717 mRNA downstream 59248 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005716 mRNA downstream 70768 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005734 mRNA upstream 36722 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005733 mRNA upstream 38243 8104466 ~ 8107046 (-) True AMCG00005733
AMCG00005706 mRNA upstream 279937 8346160 ~ 8363063 (-) True AMCG00005706
AMCG00005724 mRNA upstream 311013 8377236 ~ 8398525 (-) True AMCG00005724
AMCG00005729 mRNA upstream 338134 8404357 ~ 8404870 (-) True AMCG00005729
TU193670 other downstream 35688 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 248707 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1540457 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1954162 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2734830 5300769 ~ 5302198 (-) True G153130
TU193709 other upstream 25525 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1024199 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1359067 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2249157 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 2249157 10315380 ~ 10351719 (-) False AMCG00005850

Expression Profile