RNA id: AMCG00005704


Basic Information

Item Value
RNA id AMCG00005704
length 978
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00005704
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7999336 ~ 8001405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATCTTCTACCCGGGCTGTGATTGGCGGCTGAAACACAGGAAGTCACGGACACGTCACACGGCGGAAAGTTCCGGATTAGTATCAACACGGCGAAGGTCGAGCGCAGTCGCCACAGCGGAGAAGGACGAGGAAACACCGGCGTCGTTTCGTTTTTATTTAGTCTTTCACTCTCAAGGAAAAAATGCCCAGAGGAAGCAGAAGCAGGGTGTCCAGGGTGGCGCCTCCGGCCCGCAGGGCATCACCCCCGCCGATGGCCAGGGCTGCCCCCCAGGCCCCGGTGCCCGCCCACCCACCTCCCTCGGCGATGGCCGCCCCCGCAACGGCGCCCCGGCAGCCCGGCATGTTTGCTCAGATGGCGACCACGGCAGCCGGGGTGGCGGTGGGCTCGGCCGTGGGGCACACGATCGGCCATGCCATGACGGGGGGCTTTGGGGGCGGCGGGGCGGCCGAGCCGGCACAGGCTGACGTCACATACCAGGAGCCCCTGCCCGCGGCTCAGCCCATgtaccagcagcagcagcagcagaggaaCCCGTGCGAGTACGAGCTGAGACAGTTCATCGACTGCGCGCAGAACCAGAGCGACCTGAAGTTGTGCGAGGGCTTCAGCGAGGTGCTCAAGCAGTGCAAGTTCTCCAACGgAATGGCATGAACATctggagcaggaaaaggcatcTGAAAGGGTTTAAATGATACGAAGCATGTCTGACGCGCAGTGAATAGTTAATTTAGGTGACGCTATTCTCCTGTAGGCTGCTTTCCATCGGGCATGTGATTCAACTTATTTAACTTCCTAGGTGGAAATGTGTCTGAAATGGGAGGCACTTCCTTTTAAGAATAACGGAGGGGAAATcgttgttttcagttttgatttgtctGGAGATGCAGAGATGTCATGAAGAATGTGCTTGTGGACTTTATTTTCCCGgtgaaagcttttatttttgaatcaaaataaaaatctcccATAACTTTG

Function

GO: NA

KEGG:

id description
K22758 CHCHD2; coiled-coil-helix-coiled-coil-helix domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193660 lncRNA downstream 15411 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 124300 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 720577 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 797056 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 859548 7139180 ~ 7139794 (-) False AMCG00005685
TU193946 lncRNA upstream 572787 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 728398 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 985876 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 1094266 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 1094266 9095671 ~ 9108363 (-) True G154150
AMCG00005702 mRNA downstream 242 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005717 mRNA downstream 21562 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005716 mRNA downstream 33082 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005715 mRNA downstream 49208 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005718 mRNA downstream 97970 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005701 mRNA upstream 22127 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005703 mRNA upstream 35623 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005734 mRNA upstream 101540 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005733 mRNA upstream 103061 8104466 ~ 8107046 (-) True AMCG00005733
AMCG00005706 mRNA upstream 344755 8346160 ~ 8363063 (-) True AMCG00005706
TU193605 other downstream 211021 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1502771 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1916476 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2697144 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3709450 4288665 ~ 4289892 (-) False AMCG00005539
TU193709 other upstream 90343 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1089017 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1423885 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2313975 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 2313975 10315380 ~ 10351719 (-) False AMCG00005850

Expression Profile