RNA id: AMCG00005706


Basic Information

Item Value
RNA id AMCG00005706
length 4660
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00005706
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8346160 ~ 8363063 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGAGCGCTTCACTGACTGGCTTCTTGTCTTCCTCTTCCCCCGTCTGCGCAGAGGAGAGCGAGCTGCGCGAGAAGCTGCGCTTGGACCGGGAGGCGGAGCAGAAGCGGGCAGAGGTGACGGCGCCGGTGCTGGCGCCGGTGCTGCCCCTGCGTGTGAACCACGTGACCGGCCGGGGCGAGAGGGCGTGTCCGGAGCAGCACCCCAGCACGGCCCCGCCCCCGCCGCTGCCGCCCCCGCCACCCGTCGCTGTGATCCCCGTCCCGGTGGTGACGGCCAGCCCCGCGGCCACGCCCCACCCCCTGTCCCTGACCCTGCCGGCTGCCCTGCCCGCCGCCCTTTCGCCTCCCGCCGCCCCCCGCCTCAGCCCCCCCAGCAAGGAGGTCCACTCCCCGGCGGCGCCACCCCCCCAGCTGCAGCAGTGCCCCCTGCTGGGCCCCCAGGTCAAAGCCGAGCCCAGCACCCCCCCCCAAGCGGGCAGCcccaagcagcagcagcagcagcagcagcagccggtGATGCCCCCCTACCCTGGCTCCATCATTGCCACCTCCCAGCATGCCCTCCTCTCCCAGGGCGTCTCCCTGCAGGTGCAGCCCGGCGCTGGCGCCCGGCCGGGCAGCTTGGAGGATGCCAGGAACCTGGACCAGAAGAGACGCCCCGGGGGGGCAGGGACAAGAGAAGTACATAACAAGCTTGAAAAAAACAGGCGAGCGCACCTGAAGGAGTGCTTCGAGACGCTGAAGAGGAACATCCCCAACGTGGACGAGAAGAAGACGTCGAACCTGAGCGTGCTGAGGAGTGCCTTGCGGTATATCCAGACCCtgaagaggaaggagaaggagtACGAGCATGAGATGGAGCGCCTGGCCCGGGAGAAGATCGCCACCCAGCAGCGCCTGGCCGAGCTGAAGAACGAGCTGAGCCAGTGGATGGACGTCATGGAGATCGACCGCGTGCTGCGCCAGACCGTCCAGCCCGAGGACGACCAGGCCTCCACCTCCACGGCCTCGGAGGGTGAGGACAACATCGACCAGGACATCGAGGACGAGAGGCTGTCGGCGCTGCCCGCCTCCTTGCCCAAAGTGCCTCAGCTCCTGCCCATCTCGGCGTCTCAGCCCGACATCCTGAAGGCCGTGACCGCCTCGTCCCTGCTGCCCCCGCACCTGTCCCTCCAGCACAAGATGCCCCAGCCGCTGCCCGTCACCCTGCCGCTCACAGCCCAACCCCCGCCCACCGCTGCCCCCCTGCAGGCCCAGACGGCGATGGCCACTCCCACCGTGGTGCCGGCGCACACGCACATCATGACGGCGCCCAGCATGCAGCCCACGGTCATCGCCCACGCTGCCACGGCCTCCCATGCCTCCGTCATCCAGGCGGTCAACCACGTGATCCAGGCGGGCTCCAAGCATATCGCCCACATTGCGCCCTCCTCCTCGAACTCGGTGCAGCTGGCGCCCGCGCCCCAGCCGATCGGCCACATCACAGTGCACCCCGTCACCCACCTGAGCCAGCACCTGCCCACCATCTACCCCCAGCCCGTGGCTGTCACCCAGCCCACCGTGATGAGCCACATCGCCCACACGCTCTCGCACGCCCACGCCCAGGTCAACGGCACGGCGCCCAGCCAGCAGGCCGCTGCCATGGTGGGCAAGCAGACCGCGGTGGGCGCCCAGGTGGTCACTCACCACCCGCAGCTGGTGGGCCAGACGGTGCTCAACCCAGTGACTATGGTGACCATGCCCTCGTTCCCGGTCAGCACCCTCAAGCTGGcctgagagagatagagagatagagagagagagagagagagagaggttattTGTGGActtctaaagaaaaaaaataagaaaagagaaaaaactttaaataaatgataaaaccacaaactgcattaaaaaacaaaattaaaaaggaaaaaaaaaaagttaaccgCAACTCCGTACATTCCGAAAAAAcctgatattattttattttttttaaagtaaaaaaaaagaaaagtaacctaaagaaaaataaaaagagagagagagagcctcgATCAAGTGAACCGAGGTGTTGAAGGGGAGGTGGAGGAGTAGAGCTGGAGTGAGACTTTGAGTAAGACAGCGTATTGAAGCACTATTCTGCCCCGGACTTTGAacaatagtaattataataatattaaaaaaataataaattctaCTTAtactaatggaaaaaaaaaaaagaaaaaaaaatctgcctttctctgtgttttttgtttttatgattatcTTTTGTTGTGTGAAATGACGTTCCCTGTAATAAGGTTTCTGCACATAGCAGCTTACTAACGGCTGTGCGAATGTTTTCTTTAAGTGTAGCCATGTGCATTGAGGATGTAGACGCCAAAACCAGGCGGCTTGGCGACAAGAATATTTTTTATCAtagtttaaaaactaaaagactAAACCATCGATCATGCAGTAACCCTATATTATGTGATGCTGTGGTTAAAATGGACTGTCTGTATCCCCCCTGTTACCTGTAGTCAACGGCTATGGTTTCTCTTCACCGGCCTGAGCTCCCGTACCGAGACAAGACCAGACACCGCACTGTGCTTTACCGCGCTTATGACTTCCTCTCATGGGTTGTGTCATGGTCTTCACACGCCTATCTGTTCTTTTTCCACGATCCCACCGTGGCCGCACTACACTTTGGCTCTGGGTTTACCGTGCCGGTACCACAGTCCAACTTCCTAAAGGCTGAGGGGCACTGCTGTGGTGTGCCAGGGTGGTCTACTGGTCTCGTCCCCATTCTgcaattattaaacaaaagagAGCCGGTCGTTTCCATTCCTCAGCCACCACGGCGGAGAAGACTGTTTCTCTGGCTGCTGTCATTGGCGCTCCTTCGTTTGTTTTTGGCAGGGGTGTCCTCGTCAGGCGGGCATGTGACAAGGTTCCTGCCGGTCTTAGATCAGTAATCTTATTGTGTGCCGTGCTTCCGTGGCACTGCGGTACCCCGCTCCCAGGCCCGCTGCCGCCCACTGCTGGCGGATCGGTGCTGCTGCAGCCAGAGGTGGTGATATTGCACGCATTGCGCAGCATTTCTGAAGCAGTGAAACTAGCTTTGTGTGACTGTTTTGTGGGTTGGAGGAagatgaatttaatcaattataaCTGATTTGCTACAATTGAATTTGCTAGGGGATACAGGACATCCATATTCATGCACTCGATTTGTAAATTAAGATCCGAACCTGTAAGTTTAAGGTCTTCCTTCCTTGCAGTTGTCTAGTTATAGCTTCTTCTCATTAAGCCGGCGAAAAGCATTAGGTCACAGAATTTGGCctaacttgaaaatgtaataaaaaaaatacaatttgccaGCTATGGAAGTGAATGGGAGTCAGTTTCCCATTTTGTTTGAGGACGtattaaatactgaaattgAACCTGTAATTAGCCGATTTGGTGGGAATTGCAGTGGATAGTGAAGGCTGGTGAGCAAGACTGTTCTAGCCCTTGACCAGGAATCACATACGCCTAGATGTTGTGTCTCATCGAGCAagaggtgtttttgtttgttttgtgtagaaTGAGGTTAGTCGTTTGTTTTGAAGTCCTGTTTGGATGGCTTGCACTTGGCAGGATGATAAGAATTTTGTGTACATATTCACAGAAGAGAAATAATGTTGGAAAGTGTCTGGGGAACCAGCGAGTAGGGTCTCCGAGTAGAGCTGCGGGAAGTAAATCTGAGGAAACTTGCCAGTCATGGTCGGCCAGAACGGAAACTGCGTGAGATTCAGTATCCGAAAATAGTTCAAgaaaaaaacccaacaacaaaCACTTGTGCCACTGTCCGCTGAGTACTGATAGTgagtacaaacaaaacacagagggCAAGAGTAACATTGGTAATCAGTACTAACCgtacttagttttttttttttctttcgtagtttttgtgtgtgtttattttcagtggtGCCACGGATGTCCCAGTGTAAGTTTGGCGCTTTTGTTTTCGTACTGCTTGTGTCCCTCAGGGCAGATCGCTCGCCTGAGCTCCTCGGTGGCTCTTGCGGCAGTGTGCTCAGGAAAGATGGACAGCCTTGTGTAGAGGGCTTGTGGAGGAGAGGGGATGGTGGGGTACAACTGCAATACATGAAGAGCCTCTGTAAGCTTTTTTCCTTTGGGacttgtgcgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtggggtggtggtggtggggggatcaccacaacacaaaaaacaaaacaaaaatgctgcaGGATTTTTACTTGATTAACTCCcttttccccctcccccccatctcATGTAAATCTGTGTCAACAACTACAAGTCTAATCAAACGCTTAGCAGATGAACGACTACAGAAGCCTGTTTGCATTCCACCGCCTGTCGAACGAACTGAAACCCCATGAGGTGCACCTTCAACTCATAGCACTGTGATGCCTGCTGCTCATTGGCTCCTGCAAACTCAGAGTAGTTTTACAGTTGTGCGTAGTGCGCCGATTACAAATTGCGTGAACTTGTTTTCCTGTGTCTTGTTGGTATACGTGTATGtacccgtgtgtgtgtgtatgtgtgtgagtgaccAGGAGgaggagaatatatatattatttttttctaatgtgcgtttttttttttttatggcataATTTTG

Function

GO: NA

KEGG:

id description
K09115 MNT, ROX; MAX-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193663 lncRNA downstream 324520 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 362229 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 471118 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1067395 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 1143874 7179628 ~ 7202286 (-) True G153678
TU193946 lncRNA upstream 211129 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 366740 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 624218 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 732608 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 732608 9095671 ~ 9108363 (-) True G154150
AMCG00005733 mRNA downstream 239114 8104466 ~ 8107046 (-) True AMCG00005733
AMCG00005734 mRNA downstream 241946 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005703 mRNA downstream 279937 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005701 mRNA downstream 320448 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005704 mRNA downstream 344755 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005724 mRNA upstream 14173 8377236 ~ 8398525 (-) True AMCG00005724
AMCG00005729 mRNA upstream 41294 8404357 ~ 8404870 (-) True AMCG00005729
AMCG00005726 mRNA upstream 41911 8404974 ~ 8417809 (-) True AMCG00005726
AMCG00005723 mRNA upstream 79059 8442122 ~ 8461544 (-) True AMCG00005723
AMCG00005727 mRNA upstream 101227 8464290 ~ 8465156 (-) True AMCG00005727
TU193709 other downstream 221475 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 344820 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 557839 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1849589 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2263294 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 727359 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1062227 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1952317 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1952317 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2480778 10843841 ~ 10912745 (-) False G154677

Expression Profile