RNA id: AMCG00005707


Basic Information

Item Value
RNA id AMCG00005707
length 3149
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00005707
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8247708 ~ 8275344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGATGAGACGGCTGTGTCTTTCACAGAGGACATGTCACGAAGGGACCAGCGCTACCGGAGCCTCACCAAGGGCAACCAATGCTGCGAATGCCACGCCTCTCTCTCGCACTGGTACTATGAGAAGGAGGGACGGCTGTTCTGCAAGAAGGATTACTGGGCCAAGTTCGGGGAGCTGTGCCATGGCTGTTCGGAGGCCATCACCACCGGCCTCATCATGGTCGCAGGGGAGCAGAAATATCACCCCGAGTGCTTTACCTGTCTGAGCTGTCGGGCTTTCATTGGAGATGGGGACACCTACGCTCTAGTGGAGCGATCCAAGCTGTACTGAACCGACACCGGGACCATGAGGAAGAGTCCTTCCCCAGAGAGGGAAGAGATATTCCAGAGACTGAGTGCCATTGTCTGTGGGCACTGTTACTACCAGACCATCGTGACCCCGGTGACGCTACCCGACTCCCCGTGCTCCAGGATCCCCCACACCGTGACATTGGTATCCATCCCGGCCTCCACCGATGGCAAGCGGGGCATCTCCGTGTCCATCGACCAGACCTGCAGCCCCAACGGCTTCGGCTCCGAGCCTGGCCACACAGTACGAGTCTCCGAGGTGGACAAGGAATGCATCAGTCCAGACGTGAAGAACTCGATCCATGTGGGCGACCGGATCCTGGAGATCAACGGTACCCCGATCCGGAACGTTCCTCTGGATGAGATCGACCTGCTGATCCAGGAGACCAGCCGCCTGCTGCAGCTGACCATCGAGCACGACCCCCACGACCTGGGCGGCTCCGGGGAGGAGCTGGGCAGCGCCAGCCCCCTGTCGGACGTGGTCAGCCCCATCAGGCCGGTGACGCACGCCCCCAATGCTGACGTCGCAGGAATCCGTTCCAGGGTCATCACGCGCAGCTGTAGCATCGACAAGTCCCCCTGCTCCAGCAACACGGCGTCGCCCCTCTCCCATAGGAAGGACATCGGGCGCTCCGAGTCCCTGCGCATCGTCACCAACCGGACGCACCGCATATTCCGGCCATCCGACCTCATCCACGGAGAGGTGCTGGGCAAGGGCTGCTTCGGGCAGGCCATCAAGgtgacacacagagagaccgGGGAGGTGATGGTGATGAAGGAGCTGATCCGCTTCGATGATGAAACTCAGAGGACTTTCCTGAAAGAGGTGAAGGTGATGCGCTGCCTCGAACACCCCAACGTGCTGAAGTTCATCGGCGTCCTGTACAAGGACAAGAGGCTCAACTTCATCGCCGAGTACATCAAAGGGGGCACCCTGAGGGAGATCATCAAAAAGATGGTGAGCTCCCATGTGTTCTGGGGACCCTGGGAGCGCTGGGGGCCCTGTGAGGACTCTAAATATCCCTGGAACCAGCGAGTGAGTTTTGCCAAGGACATCGCTGCTGGAATGACGTATCTGCATTCCATGAACATCATCCATCGTGACCTGAATTCCTACAACTGTCTCGTGCGAGAGAACAAGAGTGTGGTCGTGGCTGATTTCGGCTTGGCCCGCCTCATGGTTGAAGACAAGAACCAGGACCGGCTGTCGTCTGGGAGGCTGCCTGGGCTGAAGAAACCCGACCGCAGGAAGAGGTACACCGTGGTGGGCAACCCGTACTGGATGGCCCCAGAGATGATCCATGGGAGGAGCTACGATGAGAAGGTGGACGTCTTCTCGTTCGGCATTGTCCTGTGTGAGATAATCGGGAGGGTAAATGCAGATCCGGACTACCTGCCCCGGACCATGGATTTCGGCCTGAATGTGAGGGGCTTCCTGGACCGGTACTGCCCTGCCGATTGCCCCGCCTCCTTCTTCCCCATCGCTGCCCTGTGCTGCGACCTGGACCCCGAGAAACGACCTTCCTTTGCCAAGCTGGAGGAGTGGCTGGAGAACCTCAAGATGCACCTGGACATCCGGCTCCCGCTAACATCAGAACTCGATCAGCTCCATCGCGTCTTCTGGCAGAACAACTTGCGCGCCGAGAACGGGCTCCACACCCACCCCGAGCACCCAGAGTAGCCCCGGCAccggggtgggggtggggcgAGATGCAGGAACCGAACTTGTGTGGCTCCTGCCGGGGGGGGAAAAGAGACGCACACGCACGACCTACCCACTTCAGTCAGGGCGCCACACACACGTAGGTGTAGGCGCGAGTGACCCCCGGGGGACACCTCCGCCATCACTATCCACTCCGGGGAGATCCAGGAGGCAGTGGGCATGTTCTCTGAGGTTCCGAAGTTCATGAGCAAAAGGCACTTTGTTTTCACCTTGTCAAACTGGGAATTTCGCTTCATGGTAGCGGCTCTCGCCTGTGGAATGTCAGATTCCTGTAGTTAACGTAGTTATCCTAGGTATTATTAAAAACCTGTGTATTGTAATGCTAAGACTGAAATCAATTAGCTTTTTTAAGACACGCCATGCCTTCTCTGTGAAAACACTACGAGTGTTGCAGTCGGGAGGAGAGCGGGGCTTGTTTCTGCTTCACCTCGGACGTCTCGTCTCATCACTGGAGGCTTACGGCgtgtcatttatatatatatatatcgttgAAACTGCTCTCGAAACACCGCAAACCATTACAATGCAATGGATCTATCTGTGCCGTATCACAGGTTGAAACTGATATCGAACTGTAGAATAAAAGTATAGCATAAGAAGAAACGATGCATGCCTGTAAAAGTACCCCTTCGGGTCAAAGTATAAACCTTGTTAGTTACGTGTGCTTTCCAGAATCCATGGCACTAGAGCAACAAAGTAACTTCCGGTCCGTACCGCTAGCGTGTCTCCCAACATGATCTCCGAAGTAGTGTCACACATTCCATGTAGCAGTGGCCTTTATGTACACGTCCCGATCCAAGTCTCATCGGTTCACTGTTACAGCTTTGTAGACGAACCGCCTCGCACGATCACATTTTCCATCGGATGcttttataaacttttttttatttgtatttttattatgattctATTTCATTCTTCCCGTGGAGCTAAAGAGTCCTGTGTTCAGCCCCACATCACTGTATATACTCTGTGGTATTGTGTACAGTACACgtttgaaatattatatatgtacagaaatattttatatattgatgcTGCATCGCCATATTTTTATTAAGCTCTGTGTATGAAAAAtc

Function

GO: NA

KEGG:

id description
K05743 LIMK1; LIM domain kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193728 lncRNA upstream 17118 8213904 ~ 8230590 (+) True G153815
TU193620 lncRNA upstream 359928 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 474047 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 474047 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 886391 7360384 ~ 7361317 (+) True G153702
TU193795 lncRNA downstream 70334 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 454459 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 506645 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA downstream 518483 8793827 ~ 8796424 (+) True G154030
TU194041 lncRNA downstream 578234 8853578 ~ 8853853 (+) False AMCG00005787
AMCG00005708 mRNA upstream 17118 8216790 ~ 8230590 (+) True AMCG00005708
AMCG00005709 mRNA upstream 31058 8201620 ~ 8216650 (+) True AMCG00005709
AMCG00005731 mRNA upstream 145801 8101296 ~ 8101907 (+) True AMCG00005731
AMCG00005732 mRNA upstream 147530 8099795 ~ 8100178 (+) True AMCG00005732
AMCG00005730 mRNA upstream 155240 8058166 ~ 8092468 (+) True AMCG00005730
AMCG00005705 mRNA downstream 51717 8327061 ~ 8341359 (+) True AMCG00005705
AMCG00005720 mRNA downstream 223158 8498502 ~ 8507097 (+) True AMCG00005720
AMCG00005721 mRNA downstream 232701 8508045 ~ 8523947 (+) True AMCG00005721
AMCG00005719 mRNA downstream 275761 8551105 ~ 8558820 (+) True AMCG00005719
AMCG00005736 mRNA downstream 324416 8599760 ~ 8602730 (+) True AMCG00005736
TU193739 other upstream 17118 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 981737 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1759088 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3025793 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3686224 4560213 ~ 4561484 (+) False AMCG00005546
TU193852 other downstream 228851 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1160556 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1312458 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1606038 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1789816 10065160 ~ 10076502 (+) False AMCG00005802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017531 True 2024 mRNA 0.57 16 NC_007126.7 168002 ~ 252813 (-)