RNA id: AMCG00005713


Basic Information

Item Value
RNA id AMCG00005713
length 3192
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00005713
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7967451 ~ 7975239 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACTCGCTGCCCCCTAGCGGCGAGAGGCGGCCCGACACCCCGCTCCGTCTTCAGCGCCGTCTGGCAGGAACCGCTCGGCCAGAGGAAGATGGCGACTCGAGTCCTTCAGAGGTTGGGGAACGGCCTGAGCCCGGCCAGAACCGGGGTCCGGGTCCAAGCACGGCTGCTCCTCGTCTCCAGGGGGCTGTCGGCGTCCACCAACAGGAATGGGGAGGACAGCTGGTTCAGGTCTCTCTTCGTGCGCAAGGTGGACCCCAGGAAGGACGCCCACTCTCACCTGCTCGCCAAGGGGGAGACAAGCAACCTGTACAAAATCCAGTttCACAATGTAAAGCCAGAGTGCCTGGATGCTTACAACAAACTGTGCGAGGAGGTTTTGCCGTCGATCCACGCAGACGCGCACTACCCCTGTGAGCTGGTGGGCACCTGGAACACGTGGTACGGGGAGCAGGACCAGGCCGTTCACCTGTGGAGGTACCGGGGAGGATACCCGGCCCTGACTGAAGTCATGAGCAAACTGAGGAAAAATAAGGAGTTCATGGAGTACCGCAACGAGAGGGGGAAGATGCTGCTGTCGCGCAGGAACCAGCTGCTCCTGGAGTTCAGCTTCTGGAACGAGCCGAAGCCCAGAGAGGGACCCAACATTTACGAGCTGCGGTCCTACCAGCTGAGACCTGGAACCATGATTGAGTGGGGAAACTACTGGGCTCGAGCCATCCGATATCGGCAGGCCAATCAGGAGGCGGTGGCCGGGTTCTTCTCTCAGATCGGCAGCCTCTACATGGTGCATCACCTCTGGGcttaCAAAGACCTCCAGTCCCGGGAGGACACCAGGAATGCCGCCTGGCAGCAGGACGGCTGGGATGAGTGTGTATATTACACAGTTCCTCTTATCCAACACATGGAATCCAGGATTATGATCCCCTTGTCGGTTTCCCCTCTCCAGTAGCGCACGAAGAGGCAGCCGCCAGGCCGAAAACGCACGCAAACCGCAAAACACAGTACGAATTAAATAACGCCACAACGACGTGGGAATTCAGACTGCCGTGATTTATACAACCTGTTGTAAAGATGTCTGGACACACCGACGGACTTTCctctattttatttcattttattttatttccttcagaTTAAACCTCAATAGGACATCTAGTacttttaacaattttataaCCAAAACCAATCCGTCAGGCTTCACAACTGTAACGGAACGAAGTGTAACCGATACATTATTACATCTCGTCCGTGGCTTATAACCTCCCACATTCCAGTTTAAACAAAGGCGTATTTTCACCTCTCAAACATCCAGCAATAACGATGCCATGAACTCTGAGACCGTTCTGCACCCAGGActgctttcatttaaaatccCCCACACACGGCCTTGGACTCTGGCCTTAATTGTTCACTACCAGCCTCGTCTCACACAGGCTAGACTCCTCCGCTCTCGGTTTTAACATTATTCAGTTCtatgttaatgtgttttaaaacctaTACAAGAAGGATATTACAAGAATAGAATATACAATATTGTGGAAGAATGAAAAAGCTATCATTTTCCCAATAAACATGATTTAAGGAAAGGAAACTGGTCTAATTTGCTACGTTTAAAGAATGCTAAATCATCTCGGAGGGagattttcattcaattttagTTTCCTTTAACGCGCTTCTAGAATTGTGAGCTGCTGTAATACTGTACTATCAAGTTGcaatgtttcattatttcattaaatgtgttaattgcccattttgttttcagacacATTCTATGCATGCATACCTTTGATTTGATTGTGTACCTGGTCAAAGGCaaggaataaaataagattACCCACCTTCAGTGAGATTGTTAAGCTGCTTcaggaataataaaaacattgctaCCTTTGTTATAGctttaataataacagaatagtgacatttaatcctcattcaatgCATTTATACGAGACCACGTTTTCAAAACAGtcatgtattttgaaaaactgaattgaaaaatgTGACAATCCATGCAAAGCTCAGATCTCTACGAGGATATTGAAGGTTTCTTGCTCGTGTGAGTGCACTGACTGGAGTCAACAGTCACTAGTGGAAACAATCTCCACTAGATACGATCCGGGGATATTTCACTTTTCTGTACATTATCTTTGTGTGTCGCTTTTAAACAACATCGTCAAAAGTGTTGAGCAGTGTGTGCATCTTCACATCTGAAAGACAAGGCAATTAAATTATTCACCCGTTTAAAACCTACAATTTGCTTTTatctgtatatgtttgtgtgtaggACTTGGTTATTGGCTTCTTTGGTTGGATtcgatttgttttttaatgaagtgGGCTATTCTGCTTTTTACTGGAACTGCTTGGTAAGTTTGGTAGGGTGCTCTTGGCCTGAATATATAGTTGTATGTATAATTTTTCAAAATACCAATGCTAGCCAGAGGCAAACGAAGAACAATTTTTAACTTTGCCAGCTTTGAAGTGTAGGTTTTATGCTAACGAGGCAGAACGGACAGGAACGGAGCACGCTCAGATTTTTAAAAGTACTTGCATTTGTGgtttgtgaaaactgtaactAAAGGAACAGAATCGACCTGGGATTTTCTCACGCCAGGACAAACAAAGCTTAGTCGTTAAACTGCATTCTGTGGAGTGTTAAGGCATGcccagttttaatttttttagtaCAGACTTAACAGCGTTTTATGATTATCGCCTAATATATTTGTTGgagggttttgttttcttaatcaTGTACAGTTTTTTTCAAGAGTTTATAGTTTAAAAGCACAGACGATGCTGACAAATCAGATTTATAATTGCagtcttggttttgtttctgtaatacGTCTACAACCCAGGCACACCACTGTGTAATTCACAGGACGTAATAAAGTTTATTTGCAGTCGTTGTGATTATTGGTCTTTTCttggacacacacacgcatttgTATTGAACATTGAAATTGCTATTTGTCCAGGGTTGCTTATTGATAGccaattgttattattctttaaatgtaGCTGATATTTGATAGATTTCTACTAATTTGTGTAAGACTAATACAACCttcagagaaaaacacatctaTTGGTAACAGACAAGAATTCAGAAAGCACACACTATTAAGTTTCTTAatctttaataatattatgcTATTATAATCTGGATAATACAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193620 lncRNA upstream 79671 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 193790 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 193790 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 606134 7360384 ~ 7361317 (+) True G153702
TU193564 lncRNA upstream 646200 7320615 ~ 7321251 (+) False AMCG00005694
TU193728 lncRNA downstream 238665 8213904 ~ 8230590 (+) True G153815
TU193741 lncRNA downstream 276062 8251301 ~ 8278074 (+) True G153816
TU193795 lncRNA downstream 370439 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 754564 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 806750 8781989 ~ 8805304 (+) True G154025
AMCG00005714 mRNA upstream 1384 7965059 ~ 7966067 (+) True AMCG00005714
AMCG00005710 mRNA upstream 14237 7950506 ~ 7953214 (+) True AMCG00005710
AMCG00005690 mRNA upstream 156753 7799828 ~ 7810698 (+) True AMCG00005690
AMCG00005660 mRNA upstream 179580 7772167 ~ 7787871 (+) True AMCG00005660
AMCG00005658 mRNA upstream 359537 7601285 ~ 7607914 (+) True AMCG00005658
AMCG00005711 mRNA downstream 4860 7980099 ~ 7984901 (+) True AMCG00005711
AMCG00005712 mRNA downstream 11282 7986521 ~ 7989375 (+) True AMCG00005712
AMCG00005700 mRNA downstream 28307 8003546 ~ 8021628 (+) True AMCG00005700
AMCG00005730 mRNA downstream 82927 8058166 ~ 8092468 (+) True AMCG00005730
AMCG00005732 mRNA downstream 124556 8099795 ~ 8100178 (+) True AMCG00005732
TU193523 other upstream 701480 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1478831 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2745536 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3405967 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 3682488 4283060 ~ 4284963 (+) False AMCG00005538
TU193739 other downstream 240651 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 528956 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1460661 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1612563 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1906143 9881382 ~ 9883955 (+) True G154330

Expression Profile