RNA id: AMCG00005714


Basic Information

Item Value
RNA id AMCG00005714
length 441
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00005714
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7965059 ~ 7966067 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGAAACACGCCTCGGTCCACGCGAAATGGGTCATCGGGAAGTACTATAACAAAAGGAAGACCTATTTTGCGCATGACTCCCTGGAGCAGTGCACCGTGGGGGACATCGTTCTCCTGAAGGCGCTCCCAGAGATGCGCTCAAAGCACGTGAAGCACGAGCTGGCGGAGATCGTGTACAAGGTGGGCAGCGTTGTGGACCCTCTGAGCAGGAAGCAGGTGGCTGGCAGCCTGTATCTGGAGCCCCTCTCGGACTGTACCACGTCTACTGACGAATCTCTCATCGAAAAGCTGCAGGAGTTGAACATCACAGCAGGGCCAACAACTGGGGAAAAGACCTCGGAAGTCTGAATTGAAAATGAACTTTGGGGGGGGTTGATGTCAATATTTGACTTTTCTGTGTACATTTGTGGTTAATAAACTGTGTATGTGACTGTA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193620 lncRNA upstream 77279 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 191398 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 191398 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 603742 7360384 ~ 7361317 (+) True G153702
TU193564 lncRNA upstream 643808 7320615 ~ 7321251 (+) False AMCG00005694
TU193728 lncRNA downstream 247837 8213904 ~ 8230590 (+) True G153815
TU193741 lncRNA downstream 285234 8251301 ~ 8278074 (+) True G153816
TU193795 lncRNA downstream 379611 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 763736 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 815922 8781989 ~ 8805304 (+) True G154025
AMCG00005710 mRNA upstream 11845 7950506 ~ 7953214 (+) True AMCG00005710
AMCG00005690 mRNA upstream 154361 7799828 ~ 7810698 (+) True AMCG00005690
AMCG00005660 mRNA upstream 177188 7772167 ~ 7787871 (+) True AMCG00005660
AMCG00005658 mRNA upstream 357145 7601285 ~ 7607914 (+) True AMCG00005658
AMCG00005657 mRNA upstream 413805 7549718 ~ 7551254 (+) True AMCG00005657
AMCG00005713 mRNA downstream 1384 7967451 ~ 7975239 (+) True AMCG00005713
AMCG00005711 mRNA downstream 14032 7980099 ~ 7984901 (+) True AMCG00005711
AMCG00005712 mRNA downstream 20454 7986521 ~ 7989375 (+) True AMCG00005712
AMCG00005700 mRNA downstream 37479 8003546 ~ 8021628 (+) True AMCG00005700
AMCG00005730 mRNA downstream 92099 8058166 ~ 8092468 (+) True AMCG00005730
TU193523 other upstream 699088 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1476439 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2743144 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3403575 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 3680096 4283060 ~ 4284963 (+) False AMCG00005538
TU193739 other downstream 249823 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 538128 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1469833 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1621735 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1915315 9881382 ~ 9883955 (+) True G154330

Expression Profile