RNA id: AMCG00005715


Basic Information

Item Value
RNA id AMCG00005715
length 1992
RNA type mRNA
GC content 0.58
exon number 14
gene id AMCG00005715
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7918679 ~ 7950134 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGCCTCCTGTCGAGGTGTATTGGGCTTGTCAATGATGTCGCTTTGCGTTTCTGTGATTCTGCTGGATCTGACTTTAGGCACTGTGGCCGCTGAAATGGACGACGTGTCGGAGGATGCATGGGGTCTCTTGCACGCCTGTTTCATGTCCGCCTGGCAGAACAGACTGTACCTGTACTCTGTGGCAACTGTCTGCATTGCCACCTGGTTTATCCTTCACAACGTTGTGAAGAAAAagAGTGGAGGATTGTCTGTTCCTGGCCCCACGGCTCTggatgaggaaaaaaaaacgaatggtCGAGCGATCGAGCGGGAGGCCAAGGTTCATGTCTCGGGGGTGAAGATTTTCTACGGCTCTCAGACTGGGACAGCGAAGGGCTTTGCTAAAGAACTGGCCGGAGAGCTGCAGTCTGTGGGCCTGGCTGTGGAGGTGATCGACATGAAGGAGTTTGACCCAGAAGACAGTTTGGCCGAGGAGACCACAAGCAGATCGGTGTGTGTGTTCCTGATGGCCACCTACACCGACGGGCTGCCCACAGAGAACGCCAAGTGGTTCTGCAAGTGGCTGGAGGAGGCCTCCACCGATTTCCGCTACGGCAAGACCTACCTGAAGGGCCTGAGATACGCGGTGTTCGGGCTCGGCAACTCCCTGTACGCCGAGCACTACAATAGGGTGGGCAAGAATGTGGACAAGTGGCTGTGGATGCTGAGTGCCTCCCGGGTGCTGAGCCGGGGGGAGGGCGACAGCAACGTGGCGCAGAGCCGCAACGGCAGCCTGCAGGCCGACTTCGCCGCCTGGAGTTCTCGCCTACTGGGCCGTGTGCAGGCCCTCGCCCGGGGGGAGCGGAAGAGCTGCGGGGGGAAGTGCAAATCGGGGAAGTGCAAGAACGAGAAGAAGCACCAGCGGCAACATGCAGAGGGGTCCGATCTCAACCCCGCCTCGCCCCCAGAGCACAGCTCGGAGGAGGAACTGTTTGAGACCAGCAGTGAGGAAGACTCTGCTCCTGAGGAAGAAGCCGCCCACGGGTCAGTGATTGACGTGGAGGACCTGGGCAACGTCATGAACCACATGAAGAAAGCCAAGGTGAGAACGGCCGAAAACGAGCAGCCACGGTTTGAACGGGGAACGAGGAAAGAGGAGTGGGAAGAGGATCGTGGGAAGGTCAAGTCCAAACCCAGCAGTGGGGGGAGTGAATCCGAAGAACCCAGAGAGATGATTACCCCCGCCTTGAGGAGTGCCCTGACCAAACAAGgATATAGGCTGATAGGAAGCCACTCGGGAGTCAAGCTGTGCCGATGGACCAAGTCCATGCTGAGAGGACGAGGGGGCTGCTACAAGCATACTTTTTATGGGATCGAGTCTCACCGCTGCATGGAGACCACGCCCAGTCTGGCTTGTGCCAACAAATGTGTCTTCTGTTGGAGGCACCACACTAACCCCGTCGGCACCGAGTGGCGCTGGAAAATGGACCCGCCGGAGAAGATCCTGCAGCAGGCCTTGGAGAACCACCAGAACATGATCAGACAGTTCAGAGGGGTTCCCGGTGTGAAGCCAGAGCGATTCGAGGAAGGCCTGGAAGCCCGACACTGCGCCCTCTCCCTGGTCGGGGAGCCCATCATGTACCCTGAGATCAACCGCTTTCTGAATCTGCTCCACCACCACCGGATCTCCAGCTTTCTGGTGACCAACGCACAGTTCCCCGAGGAGATCAGGAGCCTGGAGCCCGTGACACAGCTGTACGTCAGTGTGGACGCCAGCACCAAAGACAGCCTGAAGAAGATCGACCGGCCGCTCTTCAAGGACTTCTGGCAGCGGTTTCAAGACAGCTTGAAGGCCCTCGGGGAGAAGGTAGGGAGTTTAGCGATTCGCAGGGTGGCCGAAATCCCCTGCCGTGTCGAGATCAGAGACCCCATCTGTGTTCTGTGGATAGAGGACGGTGCATTTCCATCACAGACAGCCTCTGCCCACCCCTGGAGAGCCAGAGATTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K15449 TYW1; tRNA wybutosine-synthesizing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193615 lncRNA downstream 43637 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 639914 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 716393 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 778885 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 865120 7052805 ~ 7053559 (-) True G153638
TU193660 lncRNA upstream 31896 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 34106 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 624058 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 779669 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 1037147 8987281 ~ 9024879 (-) True G154126
AMCG00005718 mRNA downstream 17307 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005692 mRNA downstream 49459 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005691 mRNA downstream 90127 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005698 mRNA downstream 450179 7467691 ~ 7468500 (-) True AMCG00005698
AMCG00005659 mRNA downstream 626307 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005716 mRNA upstream 3997 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005717 mRNA upstream 25924 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005702 mRNA upstream 39222 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005704 mRNA upstream 49208 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005701 mRNA upstream 73398 8023532 ~ 8025712 (-) True AMCG00005701
TU193605 other downstream 130358 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1422108 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1835813 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2616481 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3628787 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 49202 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 141614 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1140288 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1475156 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2365246 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU7949 True 1671 lncRNA 0.46 12 NC_035897.1 23784094 ~ 23824071 (+)