RNA id: AMCG00005717


Basic Information

Item Value
RNA id AMCG00005717
length 681
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00005717
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7976058 ~ 7977780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCACCCAGCTGGAGACGAAGGAGATATTCCGCAGCGCTGATGCTGTGTGTTTCGACGTGGACAGCACTGTGATCAAAGAAGAGGGGATCGACGAGCTGGCCAAGTTCTGCGGAGTGGGGGATGCAGTCACGGAAATGACTCGCAAAGCTATGGGAGGCTCAATGACTTTTAAGACCGCGTTAACAGAACGTCTTGCCATCATCAGATGTTCCCGCGAACAAGTGAACAAGCTCATCACAGACCACCCTCCCCATTTAACTCCAGGCATTAAGGAGCTGGTGGCCTGTCTCCAGCAGCGGGGTGTGAAGGTGTTCCTGATCTCCGGAGGGTTCCGCTGCATCGTGGAGCACGTGGCCACGCAGCTCAACATCCCCCTCGACCACGTGTACGCCAACCGCCTCAAGTTCTACTTCAAcgGCGAGTACGCCGGGTTCGACGAGTCGCAGCTGACGGCCGAGTCGGGGGGGAAAGGGAGGGTCATCAGTCACCTGAGGGAGAAGTTCGGTCTGGAGACGGTGGTGATGATCGGAGACGGAGCCACGGACCTGGAGGCCTGCCCCCCAGCGAACGCCTTCATCGGGTTTGGGGGGAACGTGGTGAGGCCCCAGGTGAAGGAGAAGAGCACGTGGTACGTCACAGCTTTTGGGGAACTCCTCAAAGAACTGGAGAAGCTATAA

Function

GO: NA

KEGG:

id description
K01079 serB, PSPH; phosphoserine phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193615 lncRNA downstream 101016 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 697293 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 773772 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 836264 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 922499 7052805 ~ 7053559 (-) True G153638
TU193660 lncRNA upstream 4250 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 6460 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 596412 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 752023 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 1009501 8987281 ~ 9024879 (-) True G154126
AMCG00005716 mRNA downstream 9798 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005715 mRNA downstream 25924 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005718 mRNA downstream 74686 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005692 mRNA downstream 106838 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005691 mRNA downstream 147506 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005702 mRNA upstream 11576 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005704 mRNA upstream 21562 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005701 mRNA upstream 45752 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005703 mRNA upstream 59248 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005734 mRNA upstream 125165 8102945 ~ 8104214 (-) True AMCG00005734
TU193605 other downstream 187737 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1479487 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1893192 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2673860 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3686166 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 21556 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 113968 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1112642 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1447510 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2337600 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile