RNA id: AMCG00005718


Basic Information

Item Value
RNA id AMCG00005718
length 864
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00005718
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7896346 ~ 7901372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGGTAAATGTAGTATTCGTTCTCAACCTTTTATGGAGAGAAACCCAGTTCAGTCCTGGCCTGCATCAAGCCTGCTCTCTGGGTGGAGTTGAGAGCTGCTGGCGCTGTGACATCGAGAGCCAGCGCTGCATGCCATCGGAGCCTCCTGCGCTCTGTTTTTCTGTGCCATTGATTTACGCGGGCAGCTTTGCAGCTAATCGTTATTCCACCCCAGCTACAGAGCAGGCTGATAAGACCCCCTTCTCATCAATCCAACACGTTCGCAGGATTATCGTGCCTGGACATCGGCCACAGCTGAAGGAGCTGCTGATGGGGAGGCACGGGGTGACCTACTGTGGTGAGAGCTCGGCCAGCACCCTGACCATGGCCAACGTCCCCTGGCATGAGGAAGTCATCCACTTTGTGCAGCAGCTGACGGACATGCTCCCGGAGTACGAGATCGCCTCCGAGCACGAGCACTCCAACTGCCTCCTGGTCGCCCACACCAAGAAACGCTCTCGTTCTGACCTGAACCGGCTTATCAGCCAATTACCGCGGCACACAGGACGGCAGGCGCCAAGCGGAGAGTGGCAGGGCATTGCCCGATCCCGGCAGCCAGGCAGCGAAGCATGTCGGCACTGGCTGGCCATGTTGCTCAGGCTATCCTGGGACCGTGAGCGCGGGACGGTCTGTGCCATAGCCCGTTTACGAGGCCACGCTGAGCAGACGGCTGCGGACTGGGCGCAGAGAACCCAATGTTCGGCTACCCTTGCTGTGAAGAGGAGTCTCCGGTCCCCACTGCCAGGTTTCAGATCCACGAAACACAAGAGCACAGACGAGATCGTTACCACACAGGTTTTCACAAGTGTCTTCTGCTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0010181 FMN binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193615 lncRNA downstream 21304 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 617581 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 694060 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 756552 7139180 ~ 7139794 (-) False AMCG00005685
TU193473 lncRNA downstream 842787 7052805 ~ 7053559 (-) True G153638
TU193660 lncRNA upstream 80658 7982030 ~ 7983931 (-) True G153778
TU193663 lncRNA upstream 82868 7984240 ~ 8021640 (-) True G153779
TU193946 lncRNA upstream 672820 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 828431 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 1085909 8987281 ~ 9024879 (-) True G154126
AMCG00005692 mRNA downstream 27126 7852666 ~ 7869220 (-) True AMCG00005692
AMCG00005691 mRNA downstream 67794 7821194 ~ 7828552 (-) True AMCG00005691
AMCG00005698 mRNA downstream 427846 7467691 ~ 7468500 (-) True AMCG00005698
AMCG00005659 mRNA downstream 603974 7281620 ~ 7292372 (-) True AMCG00005659
AMCG00005688 mRNA downstream 619866 7243950 ~ 7276480 (-) True AMCG00005688
AMCG00005715 mRNA upstream 17307 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005716 mRNA upstream 52759 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005717 mRNA upstream 74686 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005702 mRNA upstream 87984 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005704 mRNA upstream 97970 7999342 ~ 8001405 (-) True AMCG00005704
TU193605 other downstream 108025 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1399775 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1813480 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2594148 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3606454 4288665 ~ 4289892 (-) False AMCG00005539
TU193670 other upstream 97964 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 190376 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1189050 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1523918 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2414008 10315380 ~ 10352782 (-) False AMCG00005850

Expression Profile