RNA id: AMCG00005719


Basic Information

Item Value
RNA id AMCG00005719
length 2847
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00005719
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8551105 ~ 8558820 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtgtgtctgtgcgcatgcatgcattttctccaccccccaaaaatctTGGGTAATATATCCCTCTGCGTGGAATTGAGAGCGATTGAAATAAACTGGGCATCTGAGCTTTCAAACAGCACAGCAGCTGCACCACGCAAGACCAGGATCCAGTCaggtcagatgtgtgtgtgtgtgtgtgtgtgcgtgcatgctctgggtgggggggtgaagtCTGTACAAAGTGAAGCAACACAATTGGCTCCGCGCCTCTGTTGATATAGTTAGCCTGGTGTCttgggctgctgctgctgctcgcCTCCGCAGCCGCCCGTGTTTCATCGTATCATCATTCACATCCATCTCAGTGGAGGCTCTGATTGCCGGCCAGGTGTCCGTCCCCGCCTCTCCGCGGGATAAACGCGTCCAGACGCCGCGCACAGCAGCCGGAGCGCCGCCTCGGATCCGCTCGTTTGCAACATTTCTGCCTTCTCTTGTGCAGGAGCAGCTGCGCCTCCCCGCCTCCGTGCAGAAAAGTGCTCGACCGCTGTGGGTTACATTTCCGTTGCATTgcatcccccccgccccccctgtCATTCATGCACCACGTTACCTGTGAATGAACTGCAGGAGGAAGacgccagtttttttttttaaaatgcagcttagtaaaatcacacttttttcactgttttgcaAAAACTTGGCGTCTGTGGTCAGCTTGCGAGATTGACCTGCACCGGCGAGCCCAGGTGATGCGCGCTGCACCCTCCTCTCCGGCTGCGTCTGGCTGATCTGGCCGACTGACTCAATACACCCCGCCGGCGTCTCCTCTCCGTGCGATGCTGGGATGGCTCGCCGCGGTTGGCATCCTGGTAGCGCTGGTCCTGCTCTGGCCGGCCACCCGACACCTGGCATCGGGCGCCCTCACCGCGGCACTGCTGAGCGGCTGGGGACCCAAGCTGTCGGACAGGTGCGTCTCGGATCCCGCAGCCGTGTCCCTGGTTTGCAAGCCCTCCGCTCTGGCCAACTACCTGCTCAAGCACTGTGCCACCTTCCGCCGCTTCGGCACGGGTCCGGGCTGGGGCTGGAGGGCGAGCCCCTTGCTGCAGACGCTGCTGGCCGTGTGCTGGCCCTCGGCGAGTGCGGTGCGCTTCGTGCGGGACTACCTGCAGCTGGGCGACGAGGGGCTGGTGGCGCTGGACTGGGCGGTGGCCGGGGCCGCGGGGGGCCACAAGCGGAGGAGGACCTCCAGCAACTCCACTAACCCGGTGCTGCTGGTCATCCCCAACTCCTTCGGCAAAATCACCGGCAACGTCCTGAAGTTGTGTGAGGTGGCCCTTGGTCATGGATACCTGCCCGTGGTGTTCAACCGGCGCAGCCAGAACGGCACCCCGCTCACCACGCCGCGGCTACAGCAGTTCGGCGACCCGGCGGACCTGCGCGAGGCGGTGCGCTACATCCGCTACCGGCAGCCCTCGGGCCGGCTGTACGCTGTGAGCGAGAGCTCGGGCTCCGGCCTGCTGCTGTCCTACCTGGGGGAGTGCGGCTCCTCCAGCTACGTCACGGCCGCCGCCTGCCTGTCGCCCCTCTTCCGCTGCCAGAGCTGGTTCGAGGACGGGCCCCCGTGGCTCTACCGCTGGGCCCTGCTGCTCTACCAGAAGATCAGCCTGAGCAGgtACCGGACGGCCCTGGGGGAGGCGCTGCAGGTGGATCAGCTGTTCTGCAGCCGCACCCTGCGGGGGGTGGAGGAGACCCTGTTCTGCCAGCCGGGGCAGCCGGGGGGCTCGGCGGTGGCCAACTGGGAAGCCTACTGGGAGCGCAACGACCCCCTGCGGGACGTGGACGAGGTGGCGATCCCGGTGCTGGCACTCTGCAGCCAGGACGACCCGGTGCGCGGGGAGCCCGGCTCCACGCTGCCGCTCGAGCTCTTCGAGACCAACCCCCACTTCTTCCTGCTGCTCACGGCGCAGGGCGGCCACTGCGGCTTCTCGGcggagggcgagggcgagggcggcCCACTGTGGAGTCACCGGGCCCTACTGGAGTTCTTCCGCTCCACCACGGACTTCTTCGCGGCCGAGGAGCGCGCCAAGCAGGCGGCACGGCGCCGGGGGCTGGGGGGCGGCGTCGGCGCCAGGGGCTTCCGGCACCGCAGCGTCAGCACCTGCAAGCGGCTGCCCACCTGCTCACACAACATCCACGCCATCTACAGCTGGCAGAGGTCCTACACCAGGTGACCGGCAGCTTCTCACTCCCCACACACCCACTTCACCAGGACGGACCCCCCTGGGCATCACACAGGGCAGCGTGGGTGCGCTCTGTCACTCCACCACTGGTGTACCAGACCCAGGATATCAACCGTAAAGGATGCGTTTTATACATTACTAACATTTTTTTGGGAGGAGGGTGTCGGGACAGGATAGTCCAGCTCTCTTGGTGAAAGTGGTGAAACTCAACATCCAATAAGAGACACGGACACTGCAGCACACATGTAAATGGaatctggtgtgtgtgtgtgtgtcagagctaGGAGATGAACCTTTCCTCTCCCACTGTTCGattcatatttgtgtatttggcATGTGCCCCCCCCAATCCTGTTGAATGGAAGGTGTTCACAGTGCGTCTGACCAGCCCTGAAGACATTGAGGACCACGTGTGCGAAGCCTGTTGGCACAGCTGGGTGTAGCCAGTCTGTGGTTTTTCAAATCCTGTTATTCAGCCCTGGTTTGTATGGAGACGTGTCTTTTAAAAGGACAGTGTTtgtgtacacatatatatatattttttccgcTTGGTACCATTGTGTGTGGAGGATTTTGAGCACTTATCCTAATAAAGAACGTCTATTTAAAGTGG

Function

GO: NA

KEGG:

id description
K13707 ABHD15; abhydrolase domain-containing protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193795 lncRNA upstream 199356 8345678 ~ 8351749 (+) True G153859
TU193741 lncRNA upstream 273031 8251301 ~ 8278074 (+) True G153816
TU193728 lncRNA upstream 320515 8213904 ~ 8230590 (+) True G153815
TU193620 lncRNA upstream 663325 7887566 ~ 7887780 (+) True G153747
TU193577 lncRNA upstream 777444 7762694 ~ 7773661 (+) False AMCG00005660
TU193916 lncRNA downstream 170983 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 223169 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA downstream 235007 8793827 ~ 8796424 (+) True G154030
TU194041 lncRNA downstream 294758 8853578 ~ 8853853 (+) False AMCG00005787
TU194085 lncRNA downstream 463130 9021950 ~ 9071747 (+) True G154091
AMCG00005721 mRNA upstream 27158 8508045 ~ 8523947 (+) True AMCG00005721
AMCG00005720 mRNA upstream 44008 8498502 ~ 8507097 (+) True AMCG00005720
AMCG00005705 mRNA upstream 209746 8327061 ~ 8341359 (+) True AMCG00005705
AMCG00005707 mRNA upstream 275761 8247708 ~ 8275344 (+) True AMCG00005707
AMCG00005708 mRNA upstream 320515 8216790 ~ 8230590 (+) True AMCG00005708
AMCG00005736 mRNA downstream 40940 8599760 ~ 8602730 (+) True AMCG00005736
AMCG00005737 mRNA downstream 56545 8615365 ~ 8615952 (+) True AMCG00005737
AMCG00005735 mRNA downstream 102987 8661807 ~ 8667423 (+) True AMCG00005735
AMCG00005738 mRNA downstream 114300 8673120 ~ 8674817 (+) True AMCG00005738
AMCG00005756 mRNA downstream 136326 8695146 ~ 8696988 (+) True AMCG00005756
TU193852 other upstream 44030 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 320515 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1285134 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2062485 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3329190 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 877080 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1028982 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1322562 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1506340 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1521615 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile