RNA id: AMCG00005720


Basic Information

Item Value
RNA id AMCG00005720
length 3350
RNA type mRNA
GC content 0.50
exon number 19
gene id AMCG00005720
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8498502 ~ 8507097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGCATCTCTCCGGGCCACAGTCAGCGATTTGGACAGCAGAGGGGGCTACAGCCGGGGACCTTTGCCTCTTGTTTTCGGCGACGATTGTCCCCACTGCTGACAGTCACTTGCGTGTCCGAGAGACGAGTAAACGAAATGGCTTcacaggagcaggaggaggtcACGGAGCAGGTGTGTCTGGAGTCCGATCTGCAGGATGGACAGATGAAGGAGGTAGAGGTGGGGAAGCAGAAAGTCCTGCTGGTGCGCAGCGAGGGGACGTACAGTGCGGTGGGCAACCTGTGCACTCACTATGGAGCCCCCCTCAGCAAAGGGGCCCTGTCTGGCAACCGGGTGCGCTGTCCCTGGCACGGCGCCTGCTTCAATGTGAAGTCCGGGGACCTGGAGGAGTTCCCCGGCCTGGACAGTCTGCCCTGTCACAAGGTAAAAATCAAGGACAACAAAGTGTTtgtgacaataaataaaaagACAGTGCAGGTGACCAAGAGAGTGAAAAGGATGGGCTGCCGAGAGACGGGACAGACCCACACCATCCTGCTGCTGGGAGgagGCCCAGCGTCGCTGCTGTGTGCAGAGACCCTGCGTCAGGAGCACTATGGGGGCCGCATCATCATGGTCACCAAGGATGACCTGCTGCCCTATGACAAGACCAAGCTGAGCAAGGTCATGAACGTGGACAGCCAGAACATCCTACTGCGGCAGATTGAGTTCTTCCATCAGTACGACATTGAGGTGTGGATGAGAAAGGAGGCCGTGTCTGTGAACACTGATAAGAAGATGGTCTCTTTCAGCGATGGCTCTGTGCAACATTACAACCAGCTTCTCATTGCCACTGGCTGCAGAGCCCGGACACTGGACTGCCCTGGTGCTGACCTAGACAACGTGAAGGTCCTGCAGACCCCCGATGATGCcgggaaaatccaccaagagGCAGTGGGCAAGGCCGCAGTCATCCTGGGTGCCTCCTTCATAGGTATGGAGGTGGCGTCCTACCTCTCGGACAAGGCTTCCAGTGTGGCAGTGATTGGCAGCAGTGACACCCCCTACAAGAACACCCTGGGGGCAGAGATTGGCAGAGTCACCATGAAGATGTTGCAGGAGAAGAACGTCCATTTCTACATGAACGACGGCGTGGCTGAGATCAAGGGGGAGAACGGCCAGGTCAAAGAAGTGGTGCTGAAGAGTGGGAAGGTCTTGCCCGCAGACGTGTTCGTCATTGGAATAGGTGTCTTGCCCAATTCGGATTTCCTTAAAGGAAGCTCGGTTGAACTGAATTCCAAACAGGCTGTCATTGTAGACAAGTCCATGAAGACCAACGTGCCGGACGTGTTCTGTGCAGGAGACGTGGCGTTCTTCCCTCTCGCCCTGCGGAAGGATGCGAGAGTCAGTATCGGCCACTGGCAGCTCGCACAGGCACAAGGACGGGTTGCTGCCCTGAATATGCTAGGCAAGCCAGTGGAGATCAACTCTGTCCCCTTCTTCTGGACGGTGCTGCTAGGAAAGAGCGTCCGTTACGCAGGCTTTGGCGAAGGGTACACAGAGATTGTCGTGAAGGGCAACGTGGAAGAAATGAAGTTTCTTCTGTTTTATATCAAGGACGGCATGGTTGTGGCAGCAGCCAGCTTGAACTACGACCCCACGGTGTCCCAGGTGGCGGAAAGGCTGGCGTCAGGGAAGAGGATTACTAAAGCACAGGCCGAATCTGCTGACCTGAGCTGGCTGAAGCTCCCCTGACACCGCAGCTCAGTTCAATCGCGTTCAACTGGGAAGACCAGGGAATGTCGCTGCCCTCCTATAAAGAGGCTGcgttttttcttcctttattcTTCCTTTTTCACAACTACCAGACAGATCCTGGATCtctacatttataaatgcttGTGATTGATAGTTGGCTGCTCGATTGGTTTCCCCGTGCTGTCTTTGGCCAGCGAATACAGTTTGGCTGGGTTTAATGGACCCAAGTGTCAAGGCTGTTATAAAAAACATCAGCATGAGATAGAGAGATGAGCTTGTTAGCTGACTGGGTTGCAGGCAGGTAACGAATAAGAATTGCAGAAATGAAATAACTGCGAAGATGCGGGTGATCCGCAGTGTTCCCTTAACCTTGCGCCAAACTACATCCTTGCACAATGCTCAGTTACAACTGGCAACAACATAGCTTGCAGAGAAGAGTCTGGACGAACATAACAACAAGAACCCAATCCAGCAGCCAAGGCCTGTTTTAAAGAGAAATGCTGTGCATCCCTCTCAGTGAGTTTCTTATCTGTTTGCAGTGCGACATAGACTACTTCCTGCACAGTATGGCGGATTGTTTTTCAGACTCTGATTTTTCCACACACCCTGGTCCCCGATTTCAGACGAGACGCACTGCCTGCTTTTTGGCTTGAATTAAGCCTCcgcaaaaaatgttttattcctttgaTTCAAAAGTTATCAGCCAAAATCCATGGCAATGACCTACCATAATGGGCCGGGTCCCAGGCCACATTTCGGCATAACCTTAAAGCATGTTTGACCATTACAGCTGGTGTCATCAAACTGGGGACCCCAGGGGGCAGTGGTAATAATCAGGCAGACTTTAGTGCACTTTCATGTAATACTCTACAGTAGGAGGGAGGGTAATTCCAGTCCTAGAGGACAGCAGcagtttctggttttcattccacctcaggtcttaattaattaatggaagTCTTTATTAGAATAAGAATTTAAATCACACTgttttattccaggtctgaatcAGTTCCAAACTGAAAGGTTCCTTATAAACCCTCCAGGACTGGCATTGCCCTACTGTCTGAATATATTACTTGCTTTGGGatttttgcttttatctttttgttCTCCTCTGTATAGACACTCGCAAGACACGAGTGAGCGAAAAGCTGTCGATGTATTTAACTCCACAAACGTCACTCTGAAAAGTCTTCTGCTTCGTACCACAAACAGACCTCAGGCATAATTCACTTGAAATGCCATTTTAACTGTTCTCTGACAGTCATGTGTAGTCATGTGATGGACTCCGTTATATAGTGTGGCTCTGAACCAACAGGCCCTGGGCATTTCTTTGGCATATACCGTGGTTTGTTACATTTATGTGTTTAGTCAGTGAAAGACAGAACTCACAGCTGCTGAAGACTCCTCAAGTCAGTTAAATGTTTAAGcgctttactttttaaatgcaagtaGATGTTGTGAGGGGTCAGATTTGGGTCTTTGACAACAAATGCAGGTTAATTTGAGAATAAAATCAGGAACTGGGTATGTGTTGCAGCCGTTTGTGTTCCATGTcggttttctttgtttgtaccgactttgaaaataaagtacatcCAGAAGGAA

Function

GO: NA

KEGG:

id description
K22747 AIFM3; apoptosis-inducing factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193795 lncRNA upstream 146753 8345678 ~ 8351749 (+) True G153859
TU193741 lncRNA upstream 220428 8251301 ~ 8278074 (+) True G153816
TU193728 lncRNA upstream 267912 8213904 ~ 8230590 (+) True G153815
TU193620 lncRNA upstream 610722 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 724841 7749183 ~ 7773661 (+) False AMCG00005660
TU193916 lncRNA downstream 222706 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 274892 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA downstream 286730 8793827 ~ 8796424 (+) True G154030
TU194041 lncRNA downstream 346481 8853578 ~ 8853853 (+) False AMCG00005787
TU194085 lncRNA downstream 514853 9021950 ~ 9071747 (+) True G154091
AMCG00005705 mRNA upstream 157143 8327061 ~ 8341359 (+) True AMCG00005705
AMCG00005707 mRNA upstream 223158 8247708 ~ 8275344 (+) True AMCG00005707
AMCG00005708 mRNA upstream 267912 8216790 ~ 8230590 (+) True AMCG00005708
AMCG00005709 mRNA upstream 281852 8201620 ~ 8216650 (+) True AMCG00005709
AMCG00005731 mRNA upstream 396595 8101296 ~ 8101907 (+) True AMCG00005731
AMCG00005721 mRNA downstream 948 8508045 ~ 8523947 (+) True AMCG00005721
AMCG00005719 mRNA downstream 44008 8551105 ~ 8558820 (+) True AMCG00005719
AMCG00005736 mRNA downstream 92663 8599760 ~ 8602730 (+) True AMCG00005736
AMCG00005737 mRNA downstream 108268 8615365 ~ 8615952 (+) True AMCG00005737
AMCG00005735 mRNA downstream 154710 8661807 ~ 8667423 (+) True AMCG00005735
TU193739 other upstream 267912 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1232531 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2009882 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3276587 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3937018 4560213 ~ 4561484 (+) False AMCG00005546
TU194290 other downstream 928803 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1080705 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1374285 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1558063 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1573338 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile