RNA id: AMCG00005732


Basic Information

Item Value
RNA id AMCG00005732
length 384
RNA type mRNA
GC content 0.64
exon number 1
gene id AMCG00005732
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8099795 ~ 8100178 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCTGGCCGGCCTGGGCTTGCTGATCTTCCTGACGGGAGCCCAGTGCACCAACTGCCTGGACGACCCTGGCGTCAAGGCGCGGTTCGTGCTGGCCTCGGGCATCACCTTCGTCCTCTCGGGCGTCACCACGTTGGTCCCCGTGTCTTGGACGGCCAACACCATCATCCATGACTTCTACAACCCCCTGGTCCCCGAGCCACTGAAGAGGGAGCTGGGTGCCGCGCTCTACGTTGGGTGGGTGACTGCTGGCTTCCTGCTGCTCGGGGGGGGCGTCCTCTGTAGCACTTGCCCGCCCCAAGAGAAGATAGACTGGCCCCCCAGGTACGCACCGGCCAGGACCGTCAGCAACAGCAGCTACGCCATCAAGAACTACGTGTGA

Function

GO:

id name namespace
GO:0031174 lifelong otolith mineralization biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193620 lncRNA upstream 212015 7887566 ~ 7887780 (+) True G153747
TU193575 lncRNA upstream 326134 7749183 ~ 7773661 (+) False AMCG00005660
TU193577 lncRNA upstream 326134 7762694 ~ 7773661 (+) False AMCG00005660
TU193569 lncRNA upstream 738478 7360384 ~ 7361317 (+) True G153702
TU193564 lncRNA upstream 778544 7320615 ~ 7321251 (+) False AMCG00005694
TU193728 lncRNA downstream 113726 8213904 ~ 8230590 (+) True G153815
TU193741 lncRNA downstream 151123 8251301 ~ 8278074 (+) True G153816
TU193795 lncRNA downstream 245500 8345678 ~ 8351749 (+) True G153859
TU193916 lncRNA downstream 629625 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 681811 8781989 ~ 8805304 (+) True G154025
AMCG00005730 mRNA upstream 7327 8058166 ~ 8092468 (+) True AMCG00005730
AMCG00005700 mRNA upstream 78167 8003546 ~ 8021628 (+) True AMCG00005700
AMCG00005712 mRNA upstream 110420 7986521 ~ 7989375 (+) True AMCG00005712
AMCG00005711 mRNA upstream 114894 7980099 ~ 7984901 (+) True AMCG00005711
AMCG00005713 mRNA upstream 124556 7967451 ~ 7975239 (+) True AMCG00005713
AMCG00005731 mRNA downstream 1118 8101296 ~ 8101907 (+) True AMCG00005731
AMCG00005709 mRNA downstream 101442 8201620 ~ 8216650 (+) True AMCG00005709
AMCG00005708 mRNA downstream 116612 8216790 ~ 8230590 (+) True AMCG00005708
AMCG00005707 mRNA downstream 147530 8247708 ~ 8275344 (+) True AMCG00005707
AMCG00005705 mRNA downstream 226883 8327061 ~ 8341359 (+) True AMCG00005705
TU193523 other upstream 833824 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 1611175 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 2877880 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 3538311 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 3814832 4283060 ~ 4284963 (+) False AMCG00005538
TU193739 other downstream 115712 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 404017 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 1335722 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 1487624 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1781204 9881382 ~ 9883955 (+) True G154330

Expression Profile