RNA id: AMCG00005733


Basic Information

Item Value
RNA id AMCG00005733
length 1233
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00005733
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8104466 ~ 8107046 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGCCACAGGAACACGGAAGCGACGGTCACAACCTCGCCgcgtttctttattttctctctaatTACCGATCGAGATGCagataataaaatgcacaacaGGATCATATTAAAGTTGTATTAGTAGGCTAGTTATGCTATTAAGATTTGATCTCCTCGTATTTTCTGGTGTATGTTCGGTTTCTTCTGCGGGAATGGTGTTTGACCTTTCtggattttaaaaagACGAAAATGGCCAAAGCAGTCCGATCATTTTCAGACGTGAAGGATGTTATACTTTCTTGTCATAAAGATGCGACCCCCGAGGATAAAATGGGTTTCTATGACAAGTGGGCAGATAACTATGAGCAGGATGTTGCCATACTGGACTACAGAGCCCCAGGCCTGGCAGCAGATGCCCTGGCAGCAGGTTTTCAGGGAGACCGAGAGAACGCAGTCGTTCTGGATGTGGCTTGTGGAACCGGCCTGGTGGCCTCGAGGCTGCAGACACTGGGGTTTCGCAGGTTTGTGGGAGTGGATGGCAGTGAGGCGATGCTACGGCAGGCCCGGGACCGAGGACTGTACCAGGAGCTcctgcagtgcatgctgggatctGAGGAACTCCCTGTCCCAGTTGAAACCTACAATGCTGTTCTTATAGTTGGGGCACTTAGTGTGGGACAAGTACCCCTCACTGTCATCAAAGACCTGTGGAAAGCGACAAAGCCAGGTGGATATGTGTGCATGACAACACGGGGAAACACATCCAACAAGGGCTTCAAAGATCAGCTGGAGTGTCTCCTGAAGAAGATGGAGACAGAGGGGCTGTGGACGGCCGTGTCCGTCACCGAAGTGCAGGCGTGGGAGAGAGCCGTGTCCGACGAAGAGGCGGGCTACATACCTGGAGCCGTGTACCTGTACCGGAAGACTGCGCTGTAACAGAAAGATACAGaggaattaatttaatgaaagtgTGATAGTCTAGACTGTGCAAAGGATTGTGCAAACATTGATATACTTTGGATAATGGATATATGAtttgtttcacttgtttaaCAGATGGATGATTTGtttgctcttgtttttttcaacCCGTTTTCATAAACATTTCCCACAGTGAGCGAAAGCATACCGACACaaagaacattcaaaaataataaaaggatttgGAAGTTTGTGTCCTGGGtccgtttttctggatttttttgttgttattctgtctctcactgttaaaatacacctaccattaaaatta

Function

GO: NA

KEGG:

id description
K24419 METTL27; methyltransferase-like protein 27

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193663 lncRNA downstream 82826 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 120535 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 229424 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 825701 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 902180 7179628 ~ 7202286 (-) True G153678
TU193946 lncRNA upstream 467146 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 622757 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 880235 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 988625 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 988625 9095671 ~ 9108363 (-) True G154150
AMCG00005734 mRNA downstream 252 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005703 mRNA downstream 38243 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005701 mRNA downstream 78754 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005704 mRNA downstream 103061 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005702 mRNA downstream 105366 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005706 mRNA upstream 239114 8346160 ~ 8363063 (-) True AMCG00005706
AMCG00005724 mRNA upstream 270190 8377236 ~ 8398525 (-) True AMCG00005724
AMCG00005729 mRNA upstream 297311 8404357 ~ 8404870 (-) True AMCG00005729
AMCG00005726 mRNA upstream 297928 8404974 ~ 8417809 (-) True AMCG00005726
AMCG00005723 mRNA upstream 335076 8442122 ~ 8461544 (-) True AMCG00005723
TU193670 other downstream 103126 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 316145 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1607895 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2021600 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2802268 5300769 ~ 5302198 (-) True G153130
TU194148 other upstream 983376 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1318244 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2208334 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 2208334 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2736795 10843841 ~ 10912745 (-) False G154677

Expression Profile