RNA id: AMCG00005734


Basic Information

Item Value
RNA id AMCG00005734
length 504
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00005734
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8102945 ~ 8104214 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCCATACTGGACTACAGAGCCCCAGGCCTGGCAGCAGATGCCCTGGCAGCAGGTTTTCAGGGAGACCGAGAGAACGCAGTTGTTCTGGATGTGGCTTGTGGAACCGGCCTGGTGGCCTCGAGGGTCTGTGGGAGTGGATGGCAGCGCAGCGATGCTACGGCTGGCCAGGAACAGAGGACTGTACCAGGAGCTcctgcaAGACGTACGATGTGGTCGTTTTGTCGGGGCTTTAAGTGTTGGACACGTCCCTGTCACCATCATCAGAGAGCTGTGGCGGGTTACAAAGCCAGGAGGGTTTGTGTGCATGACAACGCGCGGTAACACATCCGACGAGGAGTACAAAGACCGCCTGGAGAGTCTCCTGGCCGAGATGGAGAGCGAAGGGCTGTGGGGACCCGTCTCCGTCACCGAAGTGAAAGAGCTCATAAGGGCCGGGTCCGTGCAGGAGTCCGGCTACATCCCCGGACACGTGTACCTCTACAGAAAGACTTCACAGTAA

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193663 lncRNA downstream 81305 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 119014 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 227903 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 824180 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 900659 7179628 ~ 7202286 (-) True G153678
TU193946 lncRNA upstream 469978 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 625589 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 883067 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 991457 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 991457 9095671 ~ 9108363 (-) True G154150
AMCG00005703 mRNA downstream 36722 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005701 mRNA downstream 77233 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005704 mRNA downstream 101540 7999342 ~ 8001405 (-) True AMCG00005704
AMCG00005702 mRNA downstream 103845 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005717 mRNA downstream 125165 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005733 mRNA upstream 252 8104466 ~ 8107046 (-) True AMCG00005733
AMCG00005706 mRNA upstream 241946 8346160 ~ 8363063 (-) True AMCG00005706
AMCG00005724 mRNA upstream 273022 8377236 ~ 8398525 (-) True AMCG00005724
AMCG00005729 mRNA upstream 300143 8404357 ~ 8404870 (-) True AMCG00005729
AMCG00005726 mRNA upstream 300760 8404974 ~ 8417809 (-) True AMCG00005726
TU193670 other downstream 101605 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 314624 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1606374 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2020079 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2800747 5300769 ~ 5302198 (-) True G153130
TU194148 other upstream 986208 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1321076 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2211166 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 2211166 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2739627 10843841 ~ 10912745 (-) False G154677

Expression Profile