RNA id: AMCG00005735


Basic Information

Item Value
RNA id AMCG00005735
length 2236
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00005735
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8661807 ~ 8667423 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAATACTGCACAGTGTGGTATTTGCGCTGTGGTGAAAACCAGACGGATTTCTCGCAAACACGCATCTCATTAGGCCCCTGCTTGTTGAGCCGGAGGAGCTCAGTGGCCGTGAGGCCTGTGGGTGTGTCCGCGCCTCCATCAGCGGCGGCGGGGAACTATTTAAGCTCGGCGCGGAGGAGGCCTCGCTATCTCGTCCGAAGCGCCGCACGATGGTGATTTTGAAGTGCGGAGCCGCGGGGGTGCTGTTGGCCTGGCTGGCGGTGTCGCTGGCCCAGGCTCCGGGGGGCAGCTCTGCGGGGCGCTGCTCGGTGCCCGACACCCTGAGGATCGCTTGTGGGGATCCCGCCATCGCGCAGAGTGACTGCGAGGCCTTGCGCTGCTGCTTCGACGGGAAGGCCTGCTTTTACGGCAATATGGTGACGGTGCAGTGCACTGGGGACGGGCAGTTCGTGGTCGTGGTGTCCAGGACTGCCACCACCCCCCCGCTGCGTCTGGACTCGCTCAGCCTGCTCTCCGGCCCGGCCGCTCCGTGTGCCGCCGCCGGGATCTCCGATGGGTTCGCCGTGTTCCGCTTCCCCGTCCAGGCCTGCGGCACCCAGCTGGAGGGCGAGGCTGGTGACCTGGTGTATGAGAACCTGCTTTCTGCCGCTATGGATGTGAACGAGGGTCCCAATGGCTCCATCACCAGAGACAGTACTTTCAAGTATTCGGGAGACGAGTTGGTTTCTCTGGATACGGTCATCCTGACTGTCGCCCCGCCCCCCTCGGTTGTGGCCCCAGGACCCCTCAGCCTGGAACTCCGGATTGCTAGAGAAGAGCAGTACAGCTCCTACTATGGTGACGGGGACTACCCTGTGACCAAAGTCCTGCGGGACCCCGTGCCCGTGGAGGTCCGCATCCTGGGGAGGACAGACCCCAACATTGTCCTGATGCTGGACAACTGCTGGGCGACATCTGTCGCCAGCCCCCTCGGCCAGCCCCAGTGGGACCTGCTGGTGCACGGGTGCCCATACAGTGGTGACGACTACGTCACCAGCGTGATTCCCGTCAGCCTGTCTTCTGGTCTGCCCTTCCCAACTCACTACAAGAGGTTTATGATCCGTATGTTTACTTTTGTAAACCCCGACACCAGGGACCCTCTGGAGGAGAGTATCTTCATTCACTGCAGTGCGTCCGTGTGCTTCCCCTCCGCCGCTGACCGCTGTGTGGCATCGTGTAAAAGGAGGCGACGATCTGTAACTGAGGTGCGACCAGATGCTGCTTTGGGGGAGACTGTGGTTTCCAGTGGGTTGCTGCTCCTGACTAAAGATGCCCTGCTGTTGGACACCCTCAATTCTGCCAATGAGCTCCCTGCTCCACGAAAGACCGTGTCCAGTCATGCCATCGTTCTGACGGACTCTGAAGTCCAAGTGTCTGAAGCCATGTCTGAAAGCAATCTAGAGTATGAGGTCTTGCTTGTCCCTCCAGTTCCGGAGAGTTCTGAATTCTCTGGTCTTGGACCAGTTTCTCCAGCCCTCTCGGAAGGACCTTCCACTCTGGGGATGACTGAGACCCCAGTGGTGCCCAGTGACCAGACTGTCATCGCTACCTCTTCCCCTGTTGTGGATGTGCAAAGCAATGGTCACCCAGTCCTACCCTCTACAGAGAGCCCTGGCCTACAAGAGACCCACCCGGTGTTCAGCAATGAGGCGGACGGCGACTCTGAGGCCCCGGCGGACACCGAACTAGAAAACGGAGGACTTGTTGTGATGGAGTTGAACGCCACAGTGTCCAGTGCAGCAGTGAGCACAGTTGGCTCCAAACCTGGAATGTTTGGTCCCCTGGGACGCCCCCGGACTCCTGTAAAGGGGGTCCGTGTGTCCAGTGATGCTGTGTTGACTCCACCAGCTCTGAACCGGGGCAATCGTAAGGATGGCATGTCCCAGTTAATCAGCTTTGGGCTGATGGTGTTGGTCGCGTCTGTCGTGGCTGTGACCTTCATTGTGTTGCTGGTGTTTCTGGTGCGATCAAAACTACGGAAGACGCGCTGAGTGCGGACGCTCTGCTATAAAGCCATTTGACTGTTGCTTGCGATTTCCTGGTATTGGACTGATCCATTCCCAATGGCTGTGGACAAATAAACTGCTGCTGTTTACCCAATGTGTGTCAAGTGTCGTTGAACAAGCAATCTGTTGGTTTACATGAGCCCAAACCTGCTGGAATTCCCCCTTAGAGGAGGAGTGGGGTGCGTGGGG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193795 lncRNA upstream 310058 8345678 ~ 8351749 (+) True G153859
TU193741 lncRNA upstream 383733 8251301 ~ 8278074 (+) True G153816
TU193728 lncRNA upstream 431217 8213904 ~ 8230590 (+) True G153815
TU193620 lncRNA upstream 774027 7887566 ~ 7887780 (+) True G153747
TU193577 lncRNA upstream 888146 7762694 ~ 7773661 (+) False AMCG00005660
TU193916 lncRNA downstream 62380 8729803 ~ 8730155 (+) True G153955
TU194003 lncRNA downstream 114566 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA downstream 126404 8793827 ~ 8796424 (+) True G154030
TU194041 lncRNA downstream 186155 8853578 ~ 8853853 (+) False AMCG00005787
TU194085 lncRNA downstream 354527 9021950 ~ 9071747 (+) True G154091
AMCG00005737 mRNA upstream 45855 8615365 ~ 8615952 (+) True AMCG00005737
AMCG00005736 mRNA upstream 59077 8599760 ~ 8602730 (+) True AMCG00005736
AMCG00005719 mRNA upstream 102987 8551105 ~ 8558820 (+) True AMCG00005719
AMCG00005721 mRNA upstream 137860 8508045 ~ 8523947 (+) True AMCG00005721
AMCG00005720 mRNA upstream 154710 8498502 ~ 8507097 (+) True AMCG00005720
AMCG00005738 mRNA downstream 5697 8673120 ~ 8674817 (+) True AMCG00005738
AMCG00005756 mRNA downstream 27723 8695146 ~ 8696988 (+) True AMCG00005756
AMCG00005757 mRNA downstream 39802 8707225 ~ 8715724 (+) True AMCG00005757
AMCG00005754 mRNA downstream 89552 8756975 ~ 8762070 (+) True AMCG00005754
AMCG00005755 mRNA downstream 104966 8772389 ~ 8776872 (+) True AMCG00005755
TU193852 other upstream 154732 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 431217 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1395836 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2173187 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3439892 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 768477 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 920379 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 1213959 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1397737 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1413012 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile