RNA id: AMCG00005739


Basic Information

Item Value
RNA id AMCG00005739
length 615
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00005739
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8606283 ~ 8608058 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGATCAACACCGACGCGCACTTTGAGAAGAGCAACCTGGGCGAGAGCGGCGCGGCGCTGCCCGGCGACTCCCAGGAGACGGAGAAGCTGCTCAGCACCGCCGCCAGCAGCGGCTCGGAGCCGGTGAGGGGCCAGGAGGGCGTCCGGACCTCCGGCTCGTACCGGATCAGCGTGAGCAGCGAGAAGCCCCCGGAGCTGGACCAGAATGGGCACAGCGGCCCGGTCCGGTCGAGCTCCTCCGGGCAACTGTCCGGCGCGCCGCTGTCACCCTCCCGGGTCAGCCTGAGCCGCACCTCCTCCACGGGCAACACGGCGCAGGAGCACCCCAAGCCCCAGGACTACCTCATCCTGTCCATCTTCTCCTGCTTCTGCCCGGCCTGCCCGGTCAACATCGTGGCGCTGGTGTACTCCATCATGCTGCTGACTGTGTCCACTTCCTCGTGGAGAGCCCGTGAGGCTGACTTTCGGGGATGGGCATTCCCCGAAACCTCCAGAGATCTGGAGCACATGGCATTGGACTGTCTACAATCCGATGCCATGTGCTCAAGATCTCTGGAGGCATCGGGGACGTCCCGAGGAATGCCCATCTCAGCACACTACGATGTCATATGA

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193946 lncRNA downstream 18061 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 584643 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 622352 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 731241 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1327518 7278504 ~ 7278765 (-) True G153681
TU193982 lncRNA upstream 121745 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 379223 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 487613 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 487613 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 490114 9098172 ~ 9103435 (-) False G154150
AMCG00005722 mRNA downstream 76421 8528521 ~ 8529862 (-) True AMCG00005722
AMCG00005725 mRNA downstream 127997 8476286 ~ 8478286 (-) True AMCG00005725
AMCG00005728 mRNA downstream 136167 8468954 ~ 8470116 (-) True AMCG00005728
AMCG00005727 mRNA downstream 141127 8464290 ~ 8465156 (-) True AMCG00005727
AMCG00005723 mRNA downstream 144739 8442122 ~ 8461544 (-) True AMCG00005723
AMCG00005741 mRNA upstream 29742 8637800 ~ 8641690 (-) True AMCG00005741
AMCG00005740 mRNA upstream 37530 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005758 mRNA upstream 80496 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005761 mRNA upstream 113795 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005759 mRNA upstream 134254 8742312 ~ 8752368 (-) True AMCG00005759
TU193709 other downstream 481598 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 604943 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 817962 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2109712 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2523417 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 482364 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 817232 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1707322 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1707322 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2235783 10843841 ~ 10912745 (-) False G154677

Expression Profile