RNA id: AMCG00005740


Basic Information

Item Value
RNA id AMCG00005740
length 3777
RNA type mRNA
GC content 0.64
exon number 19
gene id AMCG00005740
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8645588 ~ 8661179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGATACCAGCACCACAACAACACCTCCATTCCCCGGCCCCGAGAGCCCGCGTCCCTGCCCTCCTGCGCTTCCTGGTACTGGTGCTGGTCTGCGCTCCGTCCCTCGACCCTTCCGCCAGCGCCGAGGCCGGGGTGCCGAGGCGGGCGGCCGGGGAGGCGGAGGAGACCTTCGGCCACTACCACGACTACCAAGCTCTGTCCCAGCTGCTGAGCTCGCTGGCCGAGCACAACCCGCACATCGCCAACCTGTCCACCGTGGGCCGGTCGGTGCAGGGCCGGGAGCTGTGGGTGATGCGGATCACTCGGGACCCGACGCGGGAGCAGCCGGGGAAGCCCAGGGTCAAGTATGTGGGCAACATGCACGGCGACGAGACGGTGTCCCGGCAGGTGCTGGTGTATCTGATCGAGCACCTGGTGTGGCGGTACGGGCAGGACCCCCGGGTCACCGAGCTGGTGGACGGCACCGACATCTACATCATGCCCAGCATGAACCCGGACGGCTTCGAGCGCTCCGTGGAGGGGGACTGCCAGGGCAACGCGGGCGGCCGGGAGAACGCCAAGGGCCGGGACCTGAACCGCAGCTTCCCCGACCAGTTTGAGAGCATCAGCGTCCCCCGGGAGGACGTCCCCGAGGTGGTGGCCGTCATGGACTGGATCCAGAAGAACAAGTTCGTGCTCTCCGGCAACCTGCACGGCGGCACAGTGGTGGCCAGTTACCCCTTCGATGACACCCCCACCCACGAGTCCACCGGGCACTACAGCCGCTCCTCGGACGACGCCCTGTTCCGGTTCCTGGCGCGGAGTTACGCCGAGCGGAACCCGGTGATGAGCACGGGGGAGCCCCACTGCCCCGACGCACCCTCCGAGACCTTCGAGGACGGCATTACCAACGGGGCGCGGTGGTACGACGTGCCGGGAGGCATGCAGGACTACAACTACCTGAAGGGGAATTGCTTGGAGATCACCATAGAGCTGACCTGCTGCAAGTACCCTCCCGCCTCGCAGTTACAGAAGGAGTGGGACAACAACCGAGACGCCCTGCTCTCCTACATGGAAAAGGTTCACATCGGGGTGAAGGGCTACGTCTGGGAGGCTGAGAACGGCTCGGCGCTGCCCGACGCGCTGATCACGGTCGCCGGGAACAACCACAACGTGACCACGGGCCAGTTCGGTGACTATTATCGCCTGCTGCTGCCGGGGAGCTACAACGTCACCACCAGCGCCAACGGGTTCGTCCCCGTGACGGTGAGCAACGTGCAGGTGACGGAAGGGAAGCCCACGGAGCTCAACTTCACCCTGGCGCCTCTGCGGCCCGACAATGGAAGCGCCATCCCGACCACGGAGGGCGTCACCATCCAGGCAGCAGTGTCGTCATCGAGCGCCGGCACCCCCACCACGCCGCGGCCGGAGCCCCTGCCCACGCAGCCGCAGGACTTCCGGCACCACCACTATGCCGACATGGAGCTGTTCCTGCGCCGCTACAGCATGGACTTCCCCGCCATCAGTCGCCTCTACTCCATTGGGCAGTCCGTGCAGAATCGCGAGCTCTACGTCATGGAGATCAGCAGCAACCCCGGCGTCCACGAGCCCGGCGAGCCGGAGTTCAAGTACATTGGGAACATGCATGGCAACGAGGTGGTGGGCCGGGAGCTGCTTCTCAACCTGGTGGAGTACCTGTGCAAGAACTTCGGCAGCGACCCTGAGGTCACGCAGCTCTTCGTGGCCATCCCCGACCCGCAGCAGCCCGAGACCGTGGCCGTCATGAACTGGCTGAGGACCTACCCCTTCGTCCTGTCGGCCAACCTGCACGGAGGCAAGTTTCTCGGCGTAGTGACCTACAGCCAGTCCCCTGACGACGACGTCTTCAAGATGCTCTCGCTGGCCTATTCAAAGGAAAACCCGGTCATGTACGCAGGCCACCCCTGTCAGGAGCTCTACCCCAATGAGTATTTCAAGGATGGCATCACCAATGGGGCCCAGTGGTACAACGTGGCAGGCGGGATGCAGGACTGGAACTACCTGAACACCAACTGCTTCGAGGTGACAATCGAGCTGGGCTGCGTCAAGTACCCCCCGGCCAAGGACCTGCCCATGTACTGGGAGCAGAACCGCCGGTCCCTGCTGCAGTTCATCCACCAGGTACATCGAGGGGTGAAGGGGTTCGTGATGGACGCCAAAGACGGGATAGGCATCTGGAACGCCACCATCTCCGTGGCCAAGATCGACCACCCCGTGACCACGGACAAGGCCGGAGACTACTGGCGGTTGCTGGCGCCGGGCACATACCGCCTGACCGCCACGGCACGCGGGTACACCCCGATCACGGTCTACACCACGGTGAGAGAGGGCCAGGTGGAGCACGTGGACTTCCGGCTGACCCGCGCCCGCAGCGAGGAGGAGGACCCCTTGAAGGAAGAGTTCCAGAGGTTGATAAAGGAGCTGGCGTCCGAGAAAGGCCTGGAGCGCCTGGTCCTCAGCACGCCCCCCCAGACCAAGTTCCACCGCTACCGGCCCTATAAGGAGCTGTCGGAGTTACTGCGCAGCCTCAACCTCAACTTCCCCAAGATCACGCGGCTCCGCAGGCTGGGGCAGAGCTGTGAGTTCCGCTACATCTGGGCCCTTGACATCTCCAACAAACCGGAGGAGGCGGAGCCGGCTGAGCCGAAGATCCGCTTCGTCGCCGGCATCCACGGCAACGCCCCCGTGGGCAcggagctgctgctggagttCGCCACCTTCCTGTGCATCAACTACGGCAAGAATGCGGCCATCACCAAGCTGGTGGACGAGACGAAGATCGTGATCCTGCCTTCCATCAACCCTGACGGGCGGGAGCTGGCCAAGGAGGGCGAGTGCACCTCCACGGTGGGTCGGCTCAACGCCCACGGCAAGGACCTCGACGCAGACTTCTTTGGAAACACCTCTCAGCGCATCATGGAGACCGAGCCAGAGACCCGCGCCGTGATGGACCTGATCAAGGAGAAGGGATTCACCCTGTCCGTGGCTCTGGATGGCGGCTCGGTTCTGGCCACCTACCCCTACAACAAGCCCGTGCAGCCAGATGGCTATATGCCTCCCACCGTCGTGCCCCCGGAGGCAGAGTCTCACCGCGTTGTGTTCCCGCAGGACTTCAGCATGGACGTGGGCCACTGCCCCGAGATCACGGTGTTCACCAGCTGCTGCCTGTTCCCCAGCACCGACCAGCTGTTCACCCTGTGGGAGGAGAACCAGAAGCCGCTGCTGAGCATGCTGGTGGAGgTCCACAAGGGCGTGCGAGGCATGGTGAGGGACAAGAGTGGGAAGGCCATCGTGGGGGCGACGATCCTGCTGAACAAGGGGGTGCGCGTCTACACCGGCGAGGGGGGGTACTTCCACGCCCTGCTGGCCCCCGGGGTGCACAACATCGAGGCCGTGGCCGAGGGATATCAGCAGCAGGGCCAGGAGGTGTTCATCTCGTCCTACGAAGCGGCACGCTCCATCCTCATCGAGTTTGACATGGACAACCGCATCTTCGGGCTGCCCAGGGAGTTCGTGGTGGCCACCGCAGGGGCCTCCATGACGGCCCTCATCATCACTGCCTGCATCATCTGGTGCGTGTGCTCGGCCAAGTCCAACCGGCAGAAGGATGGCTTCCACCGGCTGCGGCAGCACCGTGACGACTACGAGGACGAGATCCGGCTCACCTCCATGGGCTCCAAGAAGTCCCTGCTGAACCACGAGTTCCAGGACGAGACGGAGAGCGACGAGGAGACGCTGTACACCAACAAGCACTGA

Function

GO:

id name namespace
GO:0004180 carboxypeptidase activity molecular_function

KEGG:

id description
K07752 CPD; carboxypeptidase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193946 lncRNA downstream 57366 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 623948 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 661657 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 770546 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1366823 7278504 ~ 7278765 (-) True G153681
TU193982 lncRNA upstream 68624 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 326102 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 434492 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 434492 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 436993 9098172 ~ 9103435 (-) False G154150
AMCG00005741 mRNA downstream 3898 8637800 ~ 8641690 (-) True AMCG00005741
AMCG00005739 mRNA downstream 37530 8606283 ~ 8608058 (-) True AMCG00005739
AMCG00005722 mRNA downstream 115726 8528521 ~ 8529862 (-) True AMCG00005722
AMCG00005725 mRNA downstream 167302 8476286 ~ 8478286 (-) True AMCG00005725
AMCG00005728 mRNA downstream 175472 8468954 ~ 8470116 (-) True AMCG00005728
AMCG00005758 mRNA upstream 27375 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005761 mRNA upstream 60674 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005759 mRNA upstream 81133 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005762 mRNA upstream 102728 8763907 ~ 8764149 (-) True AMCG00005762
AMCG00005760 mRNA upstream 103332 8764511 ~ 8770868 (-) True AMCG00005760
TU193709 other downstream 520903 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 644248 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 857267 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2149017 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2562722 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 429243 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 764111 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1654201 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1654201 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2182662 10843841 ~ 10912745 (-) False G154677

Expression Profile