RNA id: AMCG00005741


Basic Information

Item Value
RNA id AMCG00005741
length 387
RNA type mRNA
GC content 0.65
exon number 5
gene id AMCG00005741
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 8637800 ~ 8641690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTCAGGAGTCATTCTCCCCCCCGGACGATGTCTCCTCCGGCAAGCTGTGCACGAGCTACAGCAGCTCCCGCGAAGCGCGCCGCGGGGACAGCTCCGACACCACCCCTCTGCTCAACAACTCcacccaggacaggatgttCGACACCATGGCGGTGGAGATCGAGCAGCTCCTGGCGAAGCTCACAGGGGTGAACGACAAGATGGCGGAGTACAGCAGCACCCCGGGGGTCGCCGCCCTCAACGCCGCCCTCATGCACACCCTGCAGCGGCACCGGGACATCCTGCAGGACTATACCCACGAGTTCCACAAAACCAAGGCCAACTTCCTCGCCATCCGGGAGCGCGAGGACCTGCTGGGCTCCGTGCGGAAGGACATCGAGTGA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005801 cis-Golgi network cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08495 GOSR1, GOS1; golgi SNAP receptor complex member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193946 lncRNA downstream 49578 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 616160 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 653869 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 762758 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 1359035 7278504 ~ 7278765 (-) True G153681
TU193982 lncRNA upstream 88113 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 345591 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 453981 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 453981 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 456482 9098172 ~ 9103435 (-) False G154150
AMCG00005739 mRNA downstream 29742 8606283 ~ 8608058 (-) True AMCG00005739
AMCG00005722 mRNA downstream 107938 8528521 ~ 8529862 (-) True AMCG00005722
AMCG00005725 mRNA downstream 159514 8476286 ~ 8478286 (-) True AMCG00005725
AMCG00005728 mRNA downstream 167684 8468954 ~ 8470116 (-) True AMCG00005728
AMCG00005727 mRNA downstream 172644 8464290 ~ 8465156 (-) True AMCG00005727
AMCG00005740 mRNA upstream 3898 8645588 ~ 8661179 (-) True AMCG00005740
AMCG00005758 mRNA upstream 46864 8688554 ~ 8691731 (-) True AMCG00005758
AMCG00005761 mRNA upstream 80163 8721853 ~ 8728092 (-) True AMCG00005761
AMCG00005759 mRNA upstream 100622 8742312 ~ 8752368 (-) True AMCG00005759
AMCG00005762 mRNA upstream 122217 8763907 ~ 8764149 (-) True AMCG00005762
TU193709 other downstream 513115 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 636460 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 849479 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2141229 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 2554934 6081235 ~ 6082866 (-) True G153342
TU194148 other upstream 448732 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 783600 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1673690 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1673690 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 2202151 10843841 ~ 10912745 (-) False G154677

Expression Profile