RNA id: AMCG00005745


Basic Information

Item Value
RNA id AMCG00005745
length 963
RNA type mRNA
GC content 0.63
exon number 8
gene id AMCG00005745
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9035288 ~ 9039062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTCCTTACTAAAACCATTCACGGTTTCCGAGGGACCCTGCAGTCTGGGACGGGGATGCCCGCAGCGGTGCACCCCGCCCCTGACGCCCCATCCAAGCCCGGGGGTGGCAGCCGGGGCTCGGGCAGGGGTGCTGGGCTGCTCCCCCGCGATGTGTGACCTGCCTCCCGGGAGAAGAAGGGTGTTTTCGGCCGCTGCTCTTGGAAGAAGAAAGCTCACACACCCGGGGAAAGCTATCTTAGCAGGGGGCATTGCGGGAGGTATTGAAATCTGCATCACTTTCCCCACGGAGTATGTCAAGACTCAGCTGCAGCTGGACGAGCGGGCCAACCCCCCGCGCTACCGGGGCATCGGGGACTGTGTGAAGCTGACCGTGCAGGACCATGGCCTGAGAGGGCTCTATCGGGGGCTGAGCTCCCTGCTCTATGGCTCCATCCCCAAATCCGCCGTCCGTTTTGGGACCTTCGAGCTGCTCAGTAACCCGATGCGGGATGCCGAGGGGAAGCTGGACAACACGCGCAGCCTGCTGTGTGGGCTGGGGGCGGGGGTGGCTGAGGCCATGCTGGTTGTGTGCCCCATGGAGACCATCAAGGTGAGTCTCCGAGGGACGTACCAGGGAGTGACTGCCACCGTCCTGAAGCAGGGATCCAATCAGGCCATCCGCTTTTACGTCATGACGTCACTGCGCAACTGGTACAAAGGTGATGACTCTCACAGGGAGATGCACCCCCTGGTGACAGCGGTGTTTGGGGCCACCGCGGGGGCTGCCAGCggCCTGGAGGCTCACCGCTACCGGAGCACTGCAGACTGTGCCTTCCAGATCCTGCGCAACGAGGGGCCACAGGCGTTCTACAAGGGCACGGTGCCGCGGCTGGGCCGGGTCTGCCTGGACGTGGCCATTGTCTTCGTCATCTACGAGGAAGTGGTGAAGCTGCTCAACAACGCGTGGAAGACGGACTGA

Function

GO:

id name namespace
GO:0010821 regulation of mitochondrion organization biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194041 lncRNA upstream 181435 8853578 ~ 8853853 (+) False AMCG00005787
TU194003 lncRNA upstream 229984 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA upstream 238864 8793827 ~ 8796424 (+) True G154030
TU193916 lncRNA upstream 305133 8729803 ~ 8730155 (+) True G153955
TU193795 lncRNA upstream 683539 8345678 ~ 8351749 (+) True G153859
TU194149 lncRNA downstream 54847 9093909 ~ 9094670 (+) True G154143
TU194153 lncRNA downstream 61367 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA downstream 61367 9100429 ~ 9108370 (+) False G154147
TU194189 lncRNA downstream 153234 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 401431 9440493 ~ 9441381 (+) True G154252
AMCG00005746 mRNA upstream 18550 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005742 mRNA upstream 131204 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005788 mRNA upstream 151487 8876410 ~ 8883801 (+) True AMCG00005788
AMCG00005789 mRNA upstream 162163 8869909 ~ 8873125 (+) True AMCG00005789
AMCG00005790 mRNA upstream 171065 8862478 ~ 8864223 (+) True AMCG00005790
AMCG00005749 mRNA downstream 44090 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005751 mRNA downstream 76409 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005752 mRNA downstream 91975 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005753 mRNA downstream 120169 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005750 mRNA downstream 125971 9165033 ~ 9180805 (+) True AMCG00005750
TU193852 other upstream 528213 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 804698 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1769317 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2546668 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3813373 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 396838 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 548740 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 842320 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1026098 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1041373 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile