RNA id: AMCG00005746


Basic Information

Item Value
RNA id AMCG00005746
length 2106
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00005746
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9010184 ~ 9016738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttctcagaagtgaaagaaaaacaaccagaTCTAAACAtggaggagagagcaggagacaGCAAAGTGTGCAGCAACTGTAAGAAGAAGGTGGCGGTGGCCAATTTCGCCCTTCACGAGCCGCACTGTCTGCGCTTCCTGGGTCTGTGCCCTGACTGCGATGAGCCAGTGCCCCACGACCAGCTTGAGGAGCATCGCCAGACTGAGCACAGCCAGGTCCGATGTCCGCAGTGTAAGAAGAAGGTAGAGAACTGCAAACTGGAGGAGCATAAGCTGCAGGAGCACCGGGAGCAGTGTGGGAGCAAGACCCAGCAATGCCCCGACTGCGGCCGCTACATCAAGCTCCGGGATGTGGATGCCCACGCCCTGACCTGCACCCCTACGGCCCCGACCGAGAGTGAGGTGCTGGAGGACACAGCGGCCCCTATCCCTCGGGCTCCAACACAGAAGCCCTCCTCTGAGCTGTGCTGGTACTGCATGAAGTCCTTCCCCCCTGAGCAGCTGAAAGCACACCAGGTGGACTGCTATACGGAGTCCCCCCCTAAGGATGAACCCCGTTACCAGCAGGACCCCCGGCCTCATTTTGGGGTGCCCCGCTCCTCGCGCTCCACCCCCTATCCACTGTGGGGGTGCAAGGGACCAGGCTGGGAGGAGACAGAAGGCGCAGACTTGGACGAGATCAGGACTTGTTCCAACTGCCACCTGGCCCTCCCGGTGGCCACTCTGCGATGGCACGAGgcaaagtGTCTGCAGTACAAAGGCTTGAGGAAGGGCCTGGCTCAGTGAAACCGCAAGCGCACCAGGAACAGGAGAGGATCAGCTCATGCGACACCCTGCCGCACAGAGAACACACATGTACAGAACGACTGAAACTCGCCGTTTCTTCCTGCGACATATCAATATCCTATTGGATGTTGTCATGCCTTCACCCCACACTTCCCCGGTTCATCGCAAGAGGTCACAGTCTCCCgaattttagttttagttgtttttcttggaTTGTTTTCTTCAGCACCTTGTTAAGGCTAATGGATCCCCGTTGCGAAGTCATGTTTACCCTCCAAGTAGCCTTTCTGTGCATTATCTTCTTGTGATTGTTTCACACCACACTTGGGTTCTCTATCCCAGACTGTCACTGCGATACAGAAGTCTAGATTATTCTTTTTGCCCTTTAGGGagctttttcctgttttctttgttaGACAACATCTGAGACTAACATTTCtcttctgtatgtatatatagagagaaaatagtttttttttccattaatttatttccctgaCAGATTCTGTGTTAATTCCCAGTCCTGGGGTGTTAAATTGGGCGATAAGGACATGAACTCATTTCGATCTTTAACCATTGTGAATATTAGAGAATAGATAATGTGTGTGATAAGAGCAAGACTTTATTGCTTAGTTTACAAAGCCATGGTGTACTTTTCTGAGGGGCACCCCTGATTGGAAACATATGCAATGCTGTTGTCATCATCCCCCTCTTCGTAGTTCGAATTTTAGTCACTGTTAATCTTTCCATCCCACGTCTGATAAATTCCAATAAATCACCCCATCCCCCTCTAAGAATTTCACTCTGCCATGCTATTAGAGCGGTACAGTTAATGGTCTTGACCCCCTCCAGAAAAATCACACTACGCCACTGTTTActgaatatatgtgtatattctCAGATATGGCGCTTTgggtaaaacattatttatctcTATAAAATTACAGGAGCTCATCAAAAAATATTGCTGGAGATTATTAGGCTTGAATGTGGAGGAGACCAACCTAATGAAGTTTTGATCAAACCTCCATTCAAATTTTGATAATTTTCAGGAGTGATCAAAATCTACCACTGGTTCCACTGCACTACACTGATACTACACTGTTTAGCACTTTTAGAAAGCATAGTCGCACAGCCATCATTAAGTAATCAGATGTTTTTGAGTATTAATAGTAGGCTACAAACTAAGCAGCTACTGTTCATTATCATTTTGATTGTTAGTTATGAGTTTTTGCTCAATAAAGTATCTTTTTCATTGCATGTTATCgtttcattcaattaaattgtgcagtacattcaaaacaatgcaGGGGGCGTCTTGGT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194041 lncRNA upstream 156331 8853578 ~ 8853853 (+) False AMCG00005787
TU194003 lncRNA upstream 204880 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA upstream 213760 8793827 ~ 8796424 (+) True G154030
TU193916 lncRNA upstream 280029 8729803 ~ 8730155 (+) True G153955
TU193795 lncRNA upstream 658435 8345678 ~ 8351749 (+) True G153859
TU194085 lncRNA downstream 5212 9021950 ~ 9071747 (+) True G154091
TU194149 lncRNA downstream 77171 9093909 ~ 9094670 (+) True G154143
TU194153 lncRNA downstream 83691 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA downstream 83691 9100429 ~ 9108370 (+) False G154147
TU194189 lncRNA downstream 175558 9192296 ~ 9194187 (+) True G154175
AMCG00005742 mRNA upstream 106100 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005788 mRNA upstream 126383 8876410 ~ 8883801 (+) True AMCG00005788
AMCG00005789 mRNA upstream 137059 8869909 ~ 8873125 (+) True AMCG00005789
AMCG00005790 mRNA upstream 145961 8862478 ~ 8864223 (+) True AMCG00005790
AMCG00005791 mRNA upstream 147812 8854382 ~ 8862372 (+) True AMCG00005791
AMCG00005745 mRNA downstream 18550 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005749 mRNA downstream 66414 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005751 mRNA downstream 98733 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005752 mRNA downstream 114299 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005753 mRNA downstream 142493 9159231 ~ 9164216 (+) True AMCG00005753
TU193852 other upstream 503109 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 779594 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1744213 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2521564 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3788269 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 419162 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 571064 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 864644 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 1048422 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 1063697 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile