RNA id: AMCG00005749


Basic Information

Item Value
RNA id AMCG00005749
length 3763
RNA type mRNA
GC content 0.53
exon number 13
gene id AMCG00005749
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9083152 ~ 9092563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGAGGGAAGATGGCGGCTGTTCGGAGCTTGCAGGTGTCAGTGAAGCCAGATGCCGGCTCAGATCACTCAGAATCGGACTCCGAATCCGACTCGGACCGGGACCCACGGGAACCGGAGCCTATGGAGGTAGAAGAAGGCGAACTGGATCTGGAGTCCATCCCAGTCCGCCGGTCTCTGAAAGAGCTGCTGCCAGACACCAGCCGCCGGTATGAAAACAAAGCTGGGACATTCATCACGGGGATCGATGTCACTTCTAAGGAAGCCGTGGAGAAGAAGGAGCAGAGAGCACGGCGCTTCCACTTCCGAGCCGAGGTGAACCTGGCCCAGAGGAATGTGGTTCTGGAGCGGAAGATCCTGAAAGAAGCTATCCCCAGAGTGCGCCTGGAGGCCCTCTACATGAGTGGTGTTGATGAGATGAGCACGCAGGAAGTTTTCGGCTACTTCAAGGAGTACCCCCCGGCCCACATTGAGTGGATAGACGACACCTCCTGTAACGTGGTGTGGCTGGATGACAACACCTCGACCCGCGCCCTCATCAACATCAGCCGCATGCCTGACCAGGAACCAGTCGACGACAAGGCCGGCCCAGAGCAGGCCCCCCCAGCGCGCCGCAGTAgagACCGCCGGGAGCAGGACTCggacgaggaagaggaggaggaggcggaggagggggaggtggaagaagaggaagacgCAGAGGACAAGAGCAGTGTGCAGAGCGAGGGGAAGCCCAGTGACGGCGAGGAAGACTCTGAAAAGAAGCCAGAGCCGGAGAAGACAGAGACTGACGTGCTGTCCGACGCCGAGAAAGAGTCCCTCCTCCGCAACGACCTCCGGCCTGCCACCAAGCCTTTCAAGGGCAACAAGCTCTTCATGAGGTTTGCCACACATGATGACAAGAAGGAGCTGGGGGCGGCCCGGCGGAGTCGGTACTACATGAAGTACGGGAATCCCAACTATGGAGGCATGAAAGGCATCCTCAGCAACTCCTGGAAGCGCCGGTTCCACTCCCGCAGGATCCAGAGGGACGTCCTGAAGACCAAGAAGAGCCTGATTGACCTGGTGAACCTGCCAGAGGAGCCCatcgaggaagaggaggaggaggaggaggagggagaggagttGGATGGAGACGAGGACATGGACGAGGACGAACGAGTGGTGGAGTAccgggaggagagggagagggagatggaccGGGAGAGGGTGGCGCGTAGCTCCGCCGTCAGCCTGTGCCGGCCCAGCTCCGGGTCCTCGGCCTCGGACTCGGACGAGATGGACTATGACCTGGAGCTCAAGATGATCTCCACCCCCTCGCCCAAGAAGAGCATGAAGATGACCATGTACGCCGACGAGGTGGAGTCCAAGCTCAAGACCATACGgcACTCCATGCACTCTGACGGGGTCTCCAGCAGCAACATCAAGGCCCGCATCGGGTCGGGAAGCAAAGCGGCCGCTGAGAAAAGGCCACACTCCCCCGAGGCCAGGCCGAGCAAGGCGACGGTCAGCGCGCACCCCCCTACACGCAGGGAGCCCCTCACTGACGTGCACAGCCGGCTGGGGACCCCCAAACAGGACTCCCGGAGCCTCTTCTCCGAAAGCAGCAAGGACAAAAAGCCAGTGAGCAGTCTGTGGAGCAGGCTCGGCTCCAGCCAGAAGGACAAGGTGCCGGTGAAGAGGTCGCCGGCTGGGACGACGGCGCCGGGCAGCGCGGCGGCAGCCAGGGGGGATAGCGCGGGCTCGGGAGCCGAGGAGGAGGACACGGAGCTGCAGAGGGTGTGGGGCGCCATGAtcaaggagaaggagaagaccCACCAGAAGAAGAGCCGCCTGGACAACCTGCCCTCGCTGCAGATCGAGATCAGTAGAGACAGCAGCAACGGCTCTGACAGCgactcctgagagagagagagagagagagagagagacggggcaGACGGAGGACTCGCTCCTCTATCCCCTCTCCAGGCCCCGCCGCCGCCCGCTCCCTCCCACACCCTCGCTCTGGGGCACAGACTCTCAACCACCGCGGCACAAACCTTACCCATTCCTACGCGAGCCCTCCGTGACTTCTCCGATCATCCGATACAAACTCCCTGGAGCACCGAGAGAGACTTTAAGACTGCGCCAAACATCCAGCATAACTTCTTGTGCTTTCCCTGCATCCCTCCAACTCCGTGGGGCTGTGCAGCTCGGGTGCCCGATCCCTAATTGGATCATAAGTGTACACATCTCAAGCGGAAGACCCTTAACTCAGTGTTTGTCGGTTTCTTGGTTCCCattctgttcttgttttgttttgcagtacGATGGCATCCTCTTGTTTTGCAGTGTCTCTATTTGTTCACCCGACAGCCTCGCCTGTCCTGCAGCCCCTGTCCCTCGTTCTGAAGCGAACCTTGCTCACCGGTCCGGACCCACGAGAAAGACCGGAGGTCGCCCCCGTCGCACCACCCTGGAGACTAGAACTGCTGGCCTCTTCGATCTTTGGACTTCTGTATTAAAACACTGCACCACGCAAATGTCAGTGAAGTTGTATACAAGACTAAATTAAAGACCTTCCAACGTTGACCCATTATGTTTTTGTACCAGAAATACACTCCCTCGAGAGGTCCCTTTTTCCAGAGGTTGAATTTGCGAGGTATTTAAAGAATGGGTGTtcagatatacacacaaaaacacgcacacgcagacACTGCCCTCTGTCTTGGGTCTGGCCTTTGTACGGCTTCTTTCGAAAGGCAGGAGGCAAGTggagagaacagaaaaaaatacttttaattgcTGGTTAACAGAACATGCCTGTCATATTTCCTTGCCTTCTCTCTTGGTTCAAATACTGTGTCTTGTTTTCAGCATAAAATAAcctcttattattgttattgttattatctgAGTCTTGTATCTTTCTTGTCTCTTGTGAAGACGCTCTGTAGGCGGCTGTGGTCTCGTAGTTCCCTCTCTGCATCTGTGTAATGCCATGGTGGTGTTCGTCATCTTACAGGACTGGAATAAGGATCTGATGCAAATAAGTTTGTTTTATCAGATTGAGTTTGGGTATCTATATTATCTTCCCTGCATTCATGTCTCATTTTGTATTGGTTGAATGTGCATTACTTTGTTTGGTATGTCTCGGCAATTGATTAATGTGCTCAAGTTAAGagacgtttttattttattttattatgaatccTTTATGAAAAGAACTTACTTTCCAGTGTTATTCCATTACTTCAAAATCATGTCGGCAGGCTTTTATTCCAGCTAGTATGGCAAAACTACTATCGTTGCCAGTTACAAAAGGTGCTAAAGTTCATCCACAGATGTAGCAGATGAAGCTTATCCTCTCAATCCAAACtatacaacacaaataaaaggtactttattttataaggGTATGCACTACTTTTGTTAATGTTATATCTTTTGTCACTCTGAAAAGATTAACCATGTGGGAAAGGAACCCAAATCTATCACTTCAGCTACTACAAGCAGTTAAGGTTTGTGGTTTGACATGCAGGTTGAACACTCACTTTGAATCAACCAGCCAGGatttacaataaaaagtaaattgatCATATAAGTTGCTCCTATTGGCAGTTCTCGTGTCTTGACTTGTGAGAGTTCACcgtttccattttgtttttaaaaagcaatcgGATCAGATAAATAGTTGGCGAGACTGCCAATTAAGTTCATTACTCTTTTAAAATGGAGTCATCTGTTTTGGTTTGAAGAACACTTGTAAGGAATTCcgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194085 lncRNA upstream 11405 9021950 ~ 9071747 (+) True G154091
TU194041 lncRNA upstream 229299 8853578 ~ 8853853 (+) False AMCG00005787
TU194003 lncRNA upstream 277848 8781989 ~ 8805304 (+) True G154025
TU194008 lncRNA upstream 286728 8793827 ~ 8796424 (+) True G154030
TU193916 lncRNA upstream 352997 8729803 ~ 8730155 (+) True G153955
TU194149 lncRNA downstream 1346 9093909 ~ 9094670 (+) True G154143
TU194153 lncRNA downstream 7866 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA downstream 7866 9100429 ~ 9108370 (+) False G154147
TU194189 lncRNA downstream 99733 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 347930 9440493 ~ 9441381 (+) True G154252
AMCG00005745 mRNA upstream 44090 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005746 mRNA upstream 66414 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005742 mRNA upstream 179068 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005788 mRNA upstream 199351 8876410 ~ 8883801 (+) True AMCG00005788
AMCG00005789 mRNA upstream 210027 8869909 ~ 8873125 (+) True AMCG00005789
AMCG00005751 mRNA downstream 22908 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005752 mRNA downstream 38474 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005753 mRNA downstream 66668 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005750 mRNA downstream 72470 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005774 mRNA downstream 148071 9240634 ~ 9251830 (+) True AMCG00005774
TU193852 other upstream 576077 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 852562 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1817181 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2594532 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3861237 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 343337 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 495239 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 788819 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 972597 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 987872 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile